Basic Information
Locus ID:
AgUnG00414
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Belongs to the iron ascorbate-dependent oxidoreductase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ctg2964 | 51948 | 53445 | - | AgUnG00414 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.37 | 39,866.92 Da | 35.88 | 75.61 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14226 | non-haem dioxygenase in morphine synthesis N-terminal | 50 | 153 | 2.1E-20 | IPR026992 |
| Pfam | PF03171 | 2OG-Fe(II) oxygenase superfamily | 211 | 301 | 3.3E-22 | IPR044861 |
| SUPERFAMILY | SSF51197 | Clavaminate synthase-like | 24 | 339 | 3.23E-86 | - |
| Gene3D | G3DSA:2.60.120.330 | - | 11 | 341 | 9.7E-88 | IPR027443 |
| ProSiteProfiles | PS51471 | Fe(2+) 2-oxoglutarate dioxygenase domain profile. | 204 | 312 | 10.968405 | IPR005123 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G36690.1 | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein. | 0 |
| RefSeq | XP_017225006.1 | PREDICTED: protein DMR6-LIKE OXYGENASE 2-like [Daucus carota subsp. sativus] | 0 |
| Q6Z244 | 2-oxoglutarate-dependent dioxygenase 19 OS=Oryza sativa subsp. japonica OX=39947 GN=2ODD19 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6L5BAS0 | Fe2OG dioxygenase domain-containing protein OS=Apium graveolens OX=4045 GN=AG4045_010490 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 0 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 0 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 0 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 0 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 0 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 0 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 0 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 0 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 0 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 0 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 0 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 0 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 0 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 0 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 0 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 0 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 0.087721 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 0 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 0 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 6 | jg1245, jg1247, jg28507, jg28508, jg28514, jg28515 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_21531, gene_21532 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg28217 |
| Anacardiaceae | Pistacia vera | 3 | pistato.v30041460, pistato.v30102900, pistato.v30102910 |
| Apiaceae | Apium graveolens | 6 | Ag1G01652, Ag6G02762, Ag6G02833, Ag9G00295, Ag9G00529 ... |
| Arecaceae | Cocos nucifera | 5 | COCNU_13G003470, COCNU_13G003480, contig68780010G000010 ... |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103723165, gene-LOC103723166 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_04.1436.V1.1, AsparagusV1_08.2355.V1.1 |
| Asteraceae | Flaveria trinervia | 4 | Ftri3G30593, Ftri4G08954, Ftri4G29191, Ftri4G33072 |
| Casuarinaceae | Casuarina equisetifolia | 5 | Ceq03G1896, Ceq09G0611, Ceq09G0613, Ceq09G0615, Ceq09G0619 |
| Casuarinaceae | Casuarina glauca | 9 | Cgl03G2041, Cgl09G0651, Cgl09G0652, Cgl09G0654, Cgl09G0655 ... |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g16590 |
| Nitrariaceae | Nitraria sibirica | 3 | evm.TU.LG04.1281, evm.TU.LG09.49, evm.TU.LG11.115 |
| Plantaginaceae | Plantago ovata | 7 | Pov_00004462, Pov_00011394, Pov_00019658, Pov_00025317 ... |
| Plumbaginaceae | Limonium bicolor | 2 | Lb3G18180, Lb5G29324 |
| Poaceae | Echinochloa crus-galli | 3 | AH08.1846, BH08.1928, CH08.2111 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_8AG0634700, gene-QOZ80_8BG0663670 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.3HG0293920.1, HORVU.MOREX.r3.5HG0430020.1 |
| Poaceae | Lolium multiflorum | 8 | gene-QYE76_017253, gene-QYE76_031069, gene-QYE76_031070 ... |
| Poaceae | Oryza coarctata | 2 | Oco15G012510, Oco16G010080 |
| Poaceae | Oryza sativa | 1 | LOC_Os08g37456.2 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_07G168300 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0403275, Pt_Chr0403276 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr20G003880, Chr29G003690 |
| Poaceae | Thinopyrum elongatum | 2 | Tel3E01G514700, Tel5E01G110600 |
| Poaceae | Triticum dicoccoides | 5 | gene_TRIDC3AG046370, gene_TRIDC3BG052630 ... |
| Poaceae | Triticum aestivum | 7 | TraesCS3A02G315300.1, TraesCS3B02G351600.1 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-17254 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g24250 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG11.1363, evm.TU.LG11.1364 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g29850 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_7_RagTag.1160, evm.TU.Scaffold_8_RagTag.586 ... |
| Rhizophoraceae | Carallia pectinifolia | 4 | nbisL1-mrna-18675, nbisL1-mrna-9668, nbisL1-mrna-9669 ... |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-14802 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-13150, nbisL1-mrna-18145 |
| Rhizophoraceae | Kandelia candel | 4 | add.evm.TU.utg000018l.231, add.evm.TU.utg000018l.232 ... |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00003229, Maker00011804 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-8906 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-18374, nbisL1-mrna-18594 |
| Salicaceae | Populus euphratica | 3 | populus_peu14806, populus_peu14811, populus_peu24183 |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132598822, gene-LOC132600189, gene-LOC132609419 |
| Solanaceae | Solanum chilense | 5 | SOLCI000741100, SOLCI000741200, SOLCI001191700 ... |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107013110, gene-LOC107013120, gene-LOC107027123 |
| Tamaricaceae | Reaumuria soongarica | 6 | gene_11311, gene_11312, gene_11313, gene_11314, gene_11315 ... |
| Tamaricaceae | Tamarix chinensis | 4 | TC12G0641, TC12G0642, TC12G0643, TC12G0771 |