Basic Information
Locus ID:
AgUnG00382
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Phd finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ctg2813 | 74820 | 79615 | - | AgUnG00382 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.34 | 26,443.46 Da | 52.84 | 71.88 | -0.66 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17015 | ING_plant | 11 | 108 | 6.0202E-32 | - |
| CDD | cd15587 | PHD_Yng1p_like | 185 | 230 | 1.14366E-30 | - |
| Pfam | PF12998 | Inhibitor of growth proteins N-terminal histone-binding | 3 | 111 | 1.6E-18 | IPR024610 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 173 | 230 | 3.5E-22 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 177 | 231 | 1.4E-27 | IPR013083 |
| Gene3D | G3DSA:6.10.140.1740 | - | 2 | 108 | 9.5E-21 | - |
| SMART | SM00249 | PHD_3 | 185 | 230 | 4.3E-10 | IPR001965 |
| SMART | SM01408 | ING_2 | 3 | 111 | 6.6E-22 | IPR024610 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 183 | 232 | 8.902599 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 186 | 229 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 113 | 153 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 121 | 138 | - | - |
| Coils | Coil | Coil | 101 | 121 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G24010.1 | RING/FYVE/PHD zinc finger superfamily protein. ING1 encodes a member of the Inhibitor of Growth family of nuclear-localized PhD domain containing homeodomain proteins. Binds to H3K4 di or trimethylated DNA. | 0 |
| RefSeq | XP_017236715.1 | PREDICTED: PHD finger protein ING1 [Daucus carota subsp. sativus] | 0 |
| Q9LIQ6 | PHD finger protein ING1 OS=Arabidopsis thaliana OX=3702 GN=ING1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6L5BB30 | PHD finger protein ING OS=Apium graveolens OX=4045 GN=AG4045_003513 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 9.747028 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 8.605581 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 8.815413 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 9.764693 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 9.738802 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 9.47418 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 10.724827 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 9.699703 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 18.342884 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 20.000223 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 18.743883 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 21.822449 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 19.261585 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 20.028856 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 20.381773 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 13.202845 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 22.655527 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 17.339693 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 18.036499 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 18.7465 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 23.863052 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 21.915705 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 20.460716 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 21.103079 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 22.793289 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 19.071066 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 18.545593 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 16.557562 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 18.900396 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 3.370741 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 6.064187 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 3.36713 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 3.714571 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 4.694152 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 2.241294 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 3.5828 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 2.653697 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 3.899843 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 11.695253 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 10.773211 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 16.387669 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 27.035707 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 22.975237 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 19.967714 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 18.173891 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 29.570705 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 21.072424 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 23.328043 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 24.642054 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 26.539606 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg12800 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_4420 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah035273 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g024140 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg21388, Sbi_jg22463 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg16342 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00016424 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl62362, Sgl66899 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000020502, gene:ENSEOMG00000022913 |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.1BG0019510, CQ.Regalona.r1.2AG0021210 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30240440 |
| Apiaceae | Apium graveolens | 1 | AgUnG00382 |
| Arecaceae | Cocos nucifera | 2 | COCNU_07G009210, COCNU_10G007100 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103697035, gene-LOC103723698, gene-LOC120103707 |
| Asteraceae | Flaveria trinervia | 2 | Ftri12G24489, Ftri12G25407 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G24010.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10002653m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g21950.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB01g037150.2N, BniB04g017260.2N, BniB04g026260.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G0214 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl07G0206 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g10140 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0237s00004.v1.0, Dusal.0237s00007.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g05870 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-4963, nbisL1-mrna-5406 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG11.666 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00022005 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G20574 |
| Poaceae | Echinochloa crus-galli | 2 | AH01.5274, CH01.5540 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0233440, gene-QOZ80_3BG0294520 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0407110.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_070854 |
| Poaceae | Oryza coarctata | 2 | Oco05G002670, Oco06G002620 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g04980.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G484100 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0100106, Pt_Chr0100219 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr01G037520, Chr07G006890, Chr07G006900, Chr12G001900 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G512100 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC4BG052480 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G409000.2, TraesCS4B02G307800.2 ... |
| Poaceae | Zea mays | 1 | Zm00001eb402910_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-2930, nbis-gene-4525 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g2091, Zma_g4436 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG13.999, evm.TU.LG21.661 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g12130 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_6_RagTag.943 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-15731 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-812 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000011l.589 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00007884 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-15173 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-4336 |
| Salicaceae | Populus euphratica | 1 | populus_peu34856 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132610699 |
| Solanaceae | Solanum chilense | 1 | SOLCI005009500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107029504 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.16613_chr09_+, STRG.19297_chr07_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC12G0310 |
| Zosteraceae | Zostera marina | 1 | Zosma04g23020.v3.1 |