Basic Information
Locus ID:
AgUnG00372
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ctg2762 | 55399 | 60087 | - | AgUnG00372 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.46 | 73,700.64 Da | 47.38 | 72.51 | -0.68 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 193 | 511 | 8.52741E-44 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 392 | 422 | 5.1E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 192 | 226 | 2.4E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 350 | 376 | 0.021 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 293 | 328 | 0.008 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 175 | 510 | 2.83E-57 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 144 | 280 | 6.7E-13 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 281 | 522 | 2.0E-39 | IPR015943 |
| SMART | SM00320 | WD40_4 | 332 | 376 | 0.39 | IPR001680 |
| SMART | SM00320 | WD40_4 | 383 | 422 | 2.9E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 285 | 328 | 5.8E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 187 | 226 | 2.6E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 236 | 273 | 0.35 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 194 | 235 | 11.811761 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 295 | 330 | 9.836508 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 295 | 337 | 12.279615 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 390 | 424 | 11.207411 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 390 | 431 | 13.816853 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 351 | 378 | 8.637032 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 194 | 228 | 9.836508 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 315 | 329 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 363 | 377 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 363 | 377 | 3.3E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 409 | 423 | 3.3E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 315 | 329 | 3.3E-5 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 181 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 642 | 665 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 561 | 588 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 19 | 86 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 561 | 592 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G20330.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_017253440.1 | PREDICTED: WD repeat-containing protein 70 [Daucus carota subsp. sativus] | 0 |
| Q0VA16 | WD repeat-containing protein 70 OS=Xenopus tropicalis OX=8364 GN=wdr70 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6L5BET4 | WD_REPEATS_REGION domain-containing protein OS=Apium graveolens OX=4045 GN=AG4045_030247 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 13.359683 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 9.650698 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 11.114186 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 12.814436 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 12.317932 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 14.421798 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 13.460815 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 12.927068 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 27.315655 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 30.782085 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 29.526873 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 27.725323 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 26.588154 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 26.858088 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 7.622563 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 10.923289 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 8.252017 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 14.252579 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 12.238179 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 13.631218 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 15.527378 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 12.791305 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 14.948113 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 14.024076 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 11.937043 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 17.868198 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 15.729645 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 13.396132 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 14.863946 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 16.860622 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 19.89362 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 17.754715 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 22.153702 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 14.931825 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 21.824223 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 14.628422 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 14.552466 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 12.811687 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 19.083973 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 12.480356 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 11.790731 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 16.674997 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 11.928144 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 32.051659 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 23.216497 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 19.647141 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 17.87789 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 14.320048 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 12.542547 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 12.301513 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg35466 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_5299 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah008291, Ah029140 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g166120 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg1080, Sbi_jg35495 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg3615 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00023416 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl74394, Sgl77947 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000006861, gene:ENSEOMG00000035958 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7AG0011360, CQ.Regalona.r1.7BG0013540 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30015270 |
| Apiaceae | Apium graveolens | 1 | AgUnG00372 |
| Arecaceae | Cocos nucifera | 2 | COCNU_07G009130, COCNU_10G007030 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103702888, gene-LOC120103802 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.246.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri11G08280 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G20330.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10001927m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g33570.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB03g069850.2N, BniB04g024500.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G2287 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G2398 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno14g03110 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0250s00007.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g11210 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-6373, nbisL1-mrna-9691 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.1650 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00015176 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.1842, BH01.2157, CH01.2252 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0127030, gene-QOZ80_2BG0182590 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0040830.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_011402 |
| Poaceae | Oryza coarctata | 2 | Oco19G005550, Oco20G005470 |
| Poaceae | Oryza sativa | 1 | LOC_Os10g32710.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G212400 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0502524 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr09G010460, Chr0G025820, Chr0G029750 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G274300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG022220, gene_TRIDC1BG026960 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G146200.1, TraesCS1B02G164300.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb222270_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-21223 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g13350 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.522, evm.TU.LG04.245 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g02040 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_9_RagTag.1062 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-21121 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-9000 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-7272 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000003l.425 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00009808 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-1409 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-4993 |
| Salicaceae | Populus euphratica | 2 | populus_peu26658, populus_peu26718 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132605711 |
| Solanaceae | Solanum chilense | 1 | SOLCI004841200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107023476 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.31680_chr09_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC08G1046 |
| Zosteraceae | Zostera marina | 1 | Zosma01g34700.v3.1 |