Basic Information
Locus ID:
AgUnG00348
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Protein of unknown function (DUF3128)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ctg2588 | 19301 | 19507 | - | AgUnG00348 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.37 | 7,971.88 Da | 57.83 | 66.03 | -0.73 |
Protein Domain:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_017248857.1 | PREDICTED: uncharacterized protein C227.17c-like isoform X1 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A6L5BAX6 | Divalent-cation tolerance protein CutA OS=Apium graveolens OX=4045 GN=AG4045_000408 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 0 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 0 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 0.335045 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 0 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 0 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 0 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 0 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 0.482491 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 0 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 0.73086 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 0.209229 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 0.441007 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 0.24259 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0.978201 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 0.270324 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 0.226885 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 0.309382 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 2.232408 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 0.126917 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 1.643878 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 2.669203 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 2.776937 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 1.553685 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 0.739464 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 0.556083 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 0.572804 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 3.690166 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.092047 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.564674 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.455513 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0.058303 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 0.21828 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.034705 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 0.29137 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0.134458 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0.892475 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 1.058907 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 0.46288 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 1.238143 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 0.10475 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 0 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg35963, jg8186 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_26047 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah011486 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g210910 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg11903, Sbi_jg46847 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00009468 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl80319, Sgl82778, Sgl82786 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000006352, gene:ENSEOMG00000022296 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.5AG0013160, CQ.Regalona.r1.5BG0013570 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30057250 |
| Apiaceae | Apium graveolens | 3 | Ag10G00653, Ag2G01028, AgUnG00348 |
| Arecaceae | Cocos nucifera | 1 | COCNU_02G009480 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103696330, gene-LOC103717681, gene-LOC120103912 |
| Asteraceae | Flaveria trinervia | 1 | Ftri6G25001 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G25315.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10026551m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g23330.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g081730.2N, BniB05g011930.2N |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G1719 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno06g05940 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g12770 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG09.772 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G19595 |
| Poaceae | Echinochloa crus-galli | 3 | AH03.2107, BH03.2304, CH03.2421 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0536810, gene-QOZ80_6BG0490110 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.1HG0083960.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_005439 |
| Poaceae | Oryza sativa | 1 | LOC_Os09g34120.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_09G025600 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0105311, Pt_Chr0600690, Pt_Chr0600692, Pt_Chr0600694 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr14G014870 |
| Poaceae | Thinopyrum elongatum | 2 | Tel1E01G613300, Tel5E01G376900 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC1AG055300, gene_TRIDC1BG063380 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS1A02G375700.1.cds1, TraesCS1B02G396100.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb314390_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-19729, nbis-gene-30674 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g30402, Zma_g30403, Zma_g32634 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG06.1061, evm.TU.LG11.462 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g15660 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-24136 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-17199, nbisL1-mrna-3073 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000027l.203 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00017897 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-5776 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-12067 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132644533 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107008527 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_3797 |
| Zosteraceae | Zostera marina | 1 | Zosma05g09750.v3.1 |