Basic Information
Locus ID:
AgUnG00282
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Ring finger
Maps and Mapping Data
| Chromosome/Scaffold | Start | End | Strand | ID |
|---|---|---|---|---|
| ctg230 | 46095 | 49241 | + | AgUnG00282 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.51 | 101,508.31 Da | 58.36 | 44.65 | -1.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 40 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 225 | 243 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 368 | 447 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 902 | 935 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 7 | 40 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 486 | 528 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 745 | 768 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 264 | 285 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 418 | 432 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 906 | 926 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 124 | 157 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 211 | 243 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 482 | 582 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_017222462.1 | PREDICTED: trithorax group protein osa-like isoform X1 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A6L5BBD7 | C2H2-type domain-containing protein OS=Apium graveolens OX=4045 GN=AG4045_017952 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 63.851135 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 49.284763 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 42.148327 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 39.126965 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 45.726688 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 46.668915 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 50.781933 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 55.448608 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 71.2668 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 69.372116 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 70.689125 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 66.797211 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 71.091187 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 66.966263 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 14.249882 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 20.369297 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 17.611284 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 25.997028 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 20.095505 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 23.464432 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 27.604465 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 25.230139 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 31.297985 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 29.015303 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 27.923058 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 34.863529 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 27.017036 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 27.797073 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 30.877207 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 15.193862 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 20.870956 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 17.014544 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 48.507072 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 25.692707 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 39.452099 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 16.686632 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 21.001009 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 18.470015 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 42.327839 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 25.628162 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 17.362783 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 45.180412 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 26.498606 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 71.771973 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 47.430122 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 40.155067 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 43.611832 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 34.320454 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 36.416748 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 33.593605 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg16585 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_6935 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah027925 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g172920 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg1653, Sbi_jg34898 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg3095 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00003279 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl72842, Sgl76371 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000004676, gene:ENSEOMG00000036551 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.7AG0003620, CQ.Regalona.r1.9BG0001980 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30062050 |
| Apiaceae | Apium graveolens | 2 | Ag8G00603, AgUnG00282 |
| Arecaceae | Cocos nucifera | 1 | COCNU_04G000890 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103704084 |
| Asparagaceae | Asparagus officinalis | 5 | AsparagusV1_02.52.V1.1, AsparagusV1_02.53.V1.1 ... |
| Asteraceae | Flaveria trinervia | 1 | Ftri10G27770 |
| Brassicaceae | Brassica nigra | 7 | BniB02g038520.2N, BniB02g038540.2N, BniB02g038560.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G1962 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G2039 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno04g18390 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g13230 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.1897 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00016268 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb6G31551, Lb6G31552, Lb6G31553 |
| Poaceae | Echinochloa crus-galli | 2 | BH07.3960, CH06.2312 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0040040, gene-QOZ80_1BG0090080 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0460350.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_002861, gene-QYE76_014953 |
| Poaceae | Oryza coarctata | 2 | Oco23G002040, Oco24G001610 |
| Poaceae | Oryza sativa | 1 | LOC_Os12g05920.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G338100 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0703237 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr02G004560, Chr05G028790 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G231600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG021640, gene_TRIDC5BG022210 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G127600.1, TraesCS5B02G126600.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb159160_P001, Zm00001eb358910_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-11391 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g9006 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG04.3227, evm.TU.LG16.374, evm.TU.LG19.922 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g40440 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_12_RagTag.174 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-24626 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-15440 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-19476 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000027l.457 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00018106 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-5531 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-11699 |
| Salicaceae | Populus euphratica | 3 | populus_peu02062, populus_peu02063, populus_peu35747 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132631019 |
| Solanaceae | Solanum chilense | 1 | SOLCI004500200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107030925 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_2974 |
| Tamaricaceae | Tamarix chinensis | 2 | TC11G0154, TC11G1130 |
| Zosteraceae | Zostera marina | 1 | Zosma01g40990.v3.1 |