Basic Information
Locus ID:
AgUnG00194
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
BEST Arabidopsis thaliana protein match is Kinase-related
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ctg182 | 12160 | 19933 | + | AgUnG00194 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.38 | 89,179.06 Da | 57.89 | 52.68 | -0.75 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF06972 | Protein of unknown function (DUF1296) | 17 | 75 | 2.7E-28 | IPR009719 |
| SUPERFAMILY | SSF46934 | UBA-like | 16 | 78 | 2.6E-12 | IPR009060 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 62 | 82 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 792 | 829 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 53 | 132 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 251 | 270 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G29370.1 | Kinase-related protein of unknown function (DUF1296). | 0 |
| RefSeq | XP_017235457.1 | PREDICTED: uncharacterized protein LOC108209185 isoform X2 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A6L5BDL9 | GIP1_N domain-containing protein OS=Apium graveolens OX=4045 GN=AG4045_017590 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 66.197807 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 54.372269 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 75.303024 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 75.460548 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 76.136757 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 111.437927 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 75.417152 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 95.468658 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 106.893272 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 105.262268 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 115.634781 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 125.903389 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 114.651428 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 95.917404 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 28.967451 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 33.209881 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 34.708134 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 47.648014 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 40.722626 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 46.075817 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 47.10326 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 59.847729 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 70.721344 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 58.276958 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 59.115578 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 52.336239 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 48.168758 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 45.861015 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 51.752705 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 158.922318 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 130.270737 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 105.272682 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 271.34903 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 109.617279 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 263.591309 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 197.35257 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 232.877533 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 226.24971 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 87.137749 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 49.177086 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 35.50885 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 60.191338 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 88.491852 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 230.039246 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 184.735016 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 60.77734 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 113.872887 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 70.487358 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 79.245758 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 77.631279 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg20712, jg22220, jg24994, jg38737 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_22445 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah016636 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg40507, Sbi_jg50543 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg2105 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00018035 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl45294, Sgl50077 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000010414, gene:ENSEOMG00000033701 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0008580, CQ.Regalona.r1.8BG0009340 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30070560 |
| Apiaceae | Apium graveolens | 3 | Ag7G00877, Ag8G00805, AgUnG00194 |
| Arecaceae | Cocos nucifera | 1 | COCNU_14G004340 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103712704, gene-LOC103714980 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_01.3147.V1.1, AsparagusV1_01.3598.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri15G20590, Ftri18G18679, Ftri5G13444 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT1G29350.1, AT1G29370.1, AT4G18150.1 |
| Brassicaceae | Eutrema salsugineum | 6 | Thhalv10006794m.g.v1.0, Thhalv10016218m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 5 | Sp1g25300.v2.2, Sp1g25310.v2.2, Sp7g15970.v2.2 ... |
| Brassicaceae | Brassica nigra | 11 | BniB01g010000.2N, BniB03g016620.2N, BniB03g033730.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G0394 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G0494 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno09g09800, gene.Cymno11g00400 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g14420 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-10752, nbisL1-mrna-4714 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG12.698 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00013226, Pov_00038421 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G14557 |
| Poaceae | Echinochloa crus-galli | 9 | AH02.2650, AH05.1247, AH05.1373, BH02.2726, BH05.1430 ... |
| Poaceae | Eleusine coracana subsp. coracana | 6 | gene-QOZ80_1AG0027630, gene-QOZ80_1BG0077810 ... |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.1HG0089390.1, HORVU.MOREX.r3.1HG0092090.2 ... |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_015218, gene-QYE76_015346, gene-QYE76_054416 |
| Poaceae | Oryza coarctata | 6 | Oco01G016540, Oco02G016690, Oco09G016960, Oco09G017780 ... |
| Poaceae | Oryza sativa | 3 | LOC_Os01g47430.1, LOC_Os05g49180.1, LOC_Os05g50480.1 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_03G221700, gene-BS78_09G238300 ... |
| Poaceae | Puccinellia tenuiflora | 5 | Pt_Chr0505682, Pt_Chr0506019, Pt_Chr0506042, Pt_Chr0605032 ... |
| Poaceae | Sporobolus alterniflorus | 12 | Chr01G015720, Chr01G016140, Chr02G013540, Chr03G012030 ... |
| Poaceae | Thinopyrum elongatum | 3 | Tel1E01G668400, Tel1E01G697000, Tel3E01G403900 |
| Poaceae | Triticum dicoccoides | 7 | gene_TRIDC1AG059530, gene_TRIDC1AG061840 ... |
| Poaceae | Triticum aestivum | 7 | TraesCS1A02G403900.1, TraesCS1A02G420300.1 ... |
| Poaceae | Zea mays | 11 | Zm00001eb093020_P001, Zm00001eb157580_P001 ... |
| Poaceae | Zoysia japonica | 5 | nbis-gene-13637, nbis-gene-24748, nbis-gene-24836 ... |
| Poaceae | Zoysia macrostachya | 6 | Zma_g10818, Zma_g27396, Zma_g27444, Zma_g28815, Zma_g28882 ... |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG18.1025, evm.TU.LG18.229, evm.TU.LG20.851 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc04g00990 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_14_RagTag.861, evm.TU.Scaffold_16_RagTag.778 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-16626, nbisL1-mrna-24954 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-5481, nbisL1-mrna-6445 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-17184, nbisL1-mrna-19170 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000022l.99, evm.TU.utg000025l.72 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00012341, Maker00016191 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-15917, nbisL1-mrna-99 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-10347, nbisL1-mrna-11067 |
| Salicaceae | Populus euphratica | 5 | populus_peu00976, populus_peu00977, populus_peu14971 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132617133, gene-LOC132623353 |
| Solanaceae | Solanum chilense | 2 | SOLCI002057000, SOLCI004488900 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107011002, gene-LOC107014456 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.27883_chr04_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC02G2853 |
| Zosteraceae | Zostera marina | 1 | Zosma01g03440.v3.1 |