Basic Information
Locus ID:
AgUnG00192
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ctg1818 | 79035 | 80742 | + | AgUnG00192 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.42 | 23,265.48 Da | 26.27 | 95.26 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03997 | VPS28 protein | 18 | 204 | 5.1E-67 | IPR007143 |
| SUPERFAMILY | SSF140427 | VPS28 C-terminal domain-like | 111 | 204 | 4.58E-34 | IPR037206 |
| SUPERFAMILY | SSF140111 | Endosomal sorting complex assembly domain | 2 | 97 | 2.62E-27 | IPR037202 |
| Gene3D | G3DSA:1.20.120.1130 | - | 106 | 205 | 8.8E-40 | IPR037206 |
| Gene3D | G3DSA:1.20.1440.200 | - | 3 | 97 | 1.4E-29 | IPR038358 |
| PIRSF | PIRSF017535 | ESCRT1_Vps28 | 1 | 205 | 1.4E-76 | IPR007143 |
| ProSiteProfiles | PS51310 | VPS28 C-terminal domain profile. | 109 | 205 | 43.940868 | IPR017899 |
| ProSiteProfiles | PS51313 | VPS28 N-terminal domain profile. | 1 | 99 | 28.867462 | IPR017898 |
Gene Ontology
Biological Process:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G21560.1 | vacuolar protein sorting-associated protein 28 homolog 1. | 0 |
| RefSeq | XP_017236143.1 | PREDICTED: vacuolar protein sorting-associated protein 28 homolog 1-like isoform X2 [Daucus carota subsp. sativus] | 0 |
| O65421 | Vacuolar protein sorting-associated protein 28 homolog 1 OS=Arabidopsis thaliana OX=3702 GN=VPS28-1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6L5BAN3 | Vacuolar protein sorting-associated protein 28 homolog OS=Apium graveolens OX=4045 GN=AG4045_006579 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 15.915786 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 13.186643 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 16.372276 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 14.768512 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 15.971913 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 20.772171 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 15.22777 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 15.317214 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 42.090443 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 46.826756 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 44.516731 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 49.687702 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 42.67424 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 44.58165 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 47.56451 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 41.620747 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 37.906673 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 26.02766 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 32.568409 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 34.969257 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 29.418392 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 43.563744 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 45.152081 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 42.246365 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 43.101681 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 26.915339 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 29.125481 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 22.396084 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 28.428627 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 29.354528 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 27.927599 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 24.517078 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 29.432642 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 33.646328 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 30.936354 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 51.445568 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 41.153366 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 53.309994 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 28.448011 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 21.94948 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 21.034451 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 39.28471 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 66.405609 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 102.768791 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 106.403191 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 46.156708 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 76.860573 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 43.439682 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 37.560608 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 39.862942 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg21909, jg24808, jg38616 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_13923, gene_22301 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah017890 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g203370 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg10271, Sbi_jg47978, Sbi_jg59029, Sbi_jg63600 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg22213, Seu_jg23289 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00020761, GOSA_00023950 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl73651, Sgl77114, Sgl80436, Sgl82897 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000012177, gene:ENSEOMG00000035272 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0004080, CQ.Regalona.r1.8BG0004240 |
| Apiaceae | Apium graveolens | 2 | Ag7G00619, AgUnG00192 |
| Arecaceae | Cocos nucifera | 2 | COCNU_06G010090, COCNU_14G006570 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103719338 |
| Asteraceae | Flaveria trinervia | 2 | Ftri18G19334, Ftri8G00839 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT4G05000.1, AT4G21560.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10026248m.g.v1.0, Thhalv10028962m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp6g03940.v2.2, Sp7g19690.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB03g022420.2N, BniB05g015570.2N, BniB08g047170.2N |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno13g05580 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0849s00003.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g26590 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG12.1024 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00039020 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.3491, BH02.3466, CH02.3005 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0035810, gene-QOZ80_1BG0085820 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0293660.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_056116, gene-QYE76_056118 |
| Poaceae | Oryza coarctata | 2 | Oco01G021920, Oco02G022490 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g57260.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G297600 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0601631 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr02G007910, Chr05G025600, Chr08G024100 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G512600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG046210, gene_TRIDC3BG052540 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G317000.1, TraesCS3B02G349400.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb151450_P001, Zm00001eb369840_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-11739, nbis-gene-31262 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g11285, Zma_g8782 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.1675, evm.TU.LG14.912 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc04g23660, gene.Posoc10g00800 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_12_RagTag.910, evm.TU.Scaffold_13_RagTag.184 |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-23832, nbisL1-mrna-29549, nbisL1-mrna-29886 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-15234, nbisL1-mrna-2916 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-20865, nbisL1-mrna-21633 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000015l.42, add.evm.TU.utg000027l.41 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00015734, Maker00017468 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-19137, nbisL1-mrna-20960 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-16933, nbisL1-mrna-23906 |
| Salicaceae | Populus euphratica | 1 | populus_peu10147 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132618512, gene-LOC132621782 |
| Solanaceae | Solanum chilense | 2 | SOLCI004257200, SOLCI007460500 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107010942, gene-LOC107012217 |
| Tamaricaceae | Reaumuria soongarica | 3 | STRG.17289_chr09_-, STRG.22169_chr09_-, gene_15836 |
| Tamaricaceae | Tamarix chinensis | 2 | TC07G1229, TC07G2250 |
| Zosteraceae | Zostera marina | 1 | Zosma04g26580.v3.1 |