Basic Information
Locus ID:
AgUnG00177
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
A Receptor for Ubiquitination Targets
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ctg1791 | 75590 | 77819 | + | AgUnG00177 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.29 | 49,781.00 Da | 51.03 | 84.18 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 90 | 130 | 4.6E-9 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 85 | 150 | 2.45E-10 | IPR036047 |
| SUPERFAMILY | SSF117281 | Kelch motif | 148 | 414 | 6.02E-18 | IPR015915 |
| Gene3D | G3DSA:2.120.10.80 | - | 143 | 423 | 3.3E-10 | IPR015915 |
| Gene3D | G3DSA:1.20.1280.50 | - | 90 | 129 | 1.5E-7 | - |
| SMART | SM00256 | fbox_2 | 93 | 133 | 6.0E-11 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 87 | 133 | 11.19311 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 26 | 68 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 35 | 59 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G15710.1 | Galactose oxidase/kelch repeat superfamily protein. | 0 |
| RefSeq | XP_017215384.1 | PREDICTED: F-box/kelch-repeat protein At5g15710 [Daucus carota subsp. sativus] | 0 |
| Q9LFV5 | F-box/kelch-repeat protein At5g15710 OS=Arabidopsis thaliana OX=3702 GN=At5g15710 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6L5BAQ3 | F-box domain-containing protein OS=Apium graveolens OX=4045 GN=AG4045_023687 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 1.625151 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 1.059826 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 1.089657 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 1.979754 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 1.650242 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 1.687304 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 1.461804 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 1.584839 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 7.641632 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 6.613701 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 6.264181 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 7.89958 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 7.473706 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 5.387596 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 4.677517 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 3.496804 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 7.075491 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 2.206661 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 2.097044 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 2.908112 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 2.622514 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 5.723005 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 5.392591 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 3.966696 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 4.232616 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 5.264735 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 4.815371 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 4.255619 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 3.284057 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.997468 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 4.744832 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 3.177939 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 3.164644 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 1.690047 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 3.541966 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0.228459 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.255465 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.239159 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 1.368668 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0.838328 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0.988174 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 4.091321 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 1.113885 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 1.561167 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 1.576962 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 3.959069 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 1.574383 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 0.566276 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 0.71393 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 0.460397 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg32924, jg40151 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_24251 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah035641 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g028380 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg21686, Sbi_jg22126 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg16056 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00008677 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl62943, Sgl67573 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000017723, gene:ENSEOMG00000020475 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2AG0017960, CQ.Regalona.r1.2BG0019490 |
| Apiaceae | Apium graveolens | 2 | Ag5G00114, AgUnG00177 |
| Arecaceae | Cocos nucifera | 2 | COCNU_01G006110, COCNU_11G011490 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103702396, gene-LOC103712753 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.1416.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri13G07954, Ftri6G01761 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G15710.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10013540m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g28420.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g007530.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G0525 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G0482 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g07340 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g20650 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.351 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00028102 |
| Poaceae | Echinochloa crus-galli | 3 | AH09.2613, BH09.2875, CH09.3083 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0300150, gene-QOZ80_4BG0330880 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0208870.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_047210 |
| Poaceae | Oryza coarctata | 2 | Oco07G018680, Oco08G017970 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g57290.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G275900 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0300336, Pt_Chr0300371 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr23G001480, Chr26G017820, Chr30G001110 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G920600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG075380, gene_TRIDC2BG082480 |
| Poaceae | Triticum aestivum | 1 | TraesCS2D02G541700.1.cds1 |
| Poaceae | Zea mays | 3 | Zm00001eb036100_P001, Zm00001eb036110_P001 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-6136 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g22179 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG05.711, evm.TU.LG25.611 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g14580 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_12_RagTag.771, evm.TU.Scaffold_3_RagTag.1677 ... |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-15322, nbisL1-mrna-1975, nbisL1-mrna-2121 |
| Rhizophoraceae | Ceriops tagal | 3 | nbisL1-mrna-12346, nbisL1-mrna-15769, nbisL1-mrna-1846 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-2877, nbisL1-mrna-361 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000011l.117, add.evm.TU.utg000019l.100 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00007367 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-18854, nbisL1-mrna-22314 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-13041, nbisL1-mrna-3779 |
| Salicaceae | Populus euphratica | 3 | populus_peu09429, populus_peu09432, populus_peu25082 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132622604 |
| Solanaceae | Solanum chilense | 1 | SOLCI003995500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107008841 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.2116_chr01_+ |
| Tamaricaceae | Tamarix chinensis | 2 | TC01G0117, TC05G1342 |