Basic Information
Locus ID:
AgUnG00167
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ctg1791 | 991 | 1640 | + | AgUnG00167 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.95 | 13,274.87 Da | 33.14 | 85.74 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 11 | 46 | 6.6E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 51 | 92 | 0.075 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 3 | 96 | 1.5E-19 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 1 | 113 | 3.0E-23 | IPR015943 |
| SMART | SM00320 | WD40_4 | 49 | 92 | 0.71 | IPR001680 |
| SMART | SM00320 | WD40_4 | 7 | 46 | 2.9E-6 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 14 | 55 | 10.775796 | IPR001680 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G15470.2 | - | 0 |
| RefSeq | XP_017219671.1 | PREDICTED: serine-threonine kinase receptor-associated protein-like [Daucus carota subsp. sativus] | 0 |
| Q5E959 | Serine-threonine kinase receptor-associated protein OS=Bos taurus OX=9913 GN=STRAP PE=2 SV=1 | 0 | |
| TrEMBL | A0A6L5BFA1 | WD_REPEATS_REGION domain-containing protein OS=Apium graveolens OX=4045 GN=AG4045_023675 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 0 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 0 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 0 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 0.33643 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 0.548465 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 4.161061 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 0 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0.305744 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 0.264632 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 1.838583 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 0.744588 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 0 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 0 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 1.357255 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 0.355163 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 0.14364 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 0.90731 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 1.156416 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 0.382286 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 0.523306 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 1.144407 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 0.134151 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.017171 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 1.213775 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 8.460045 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0.596401 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 0.768526 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 1.815498 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0.213764 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0.223932 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0.5384 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 2.055013 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 1.43711 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 0.576189 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 0.73605 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 0 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg18212 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_10669 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah014442 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_8g195310 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg24858, Sbi_jg8722 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg19881 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00007895 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl42113, Sgl46884 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000009451, gene:ENSEOMG00000032076 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0021050, CQ.Regalona.r1.8BG0021360 |
| Anacardiaceae | Pistacia vera | 3 | pistato.v30127420, pistato.v30255770, pistato.v30294530 |
| Apiaceae | Apium graveolens | 5 | Ag3G02785, Ag5G00122, Ag9G01159, AgUnG00130, AgUnG00167 |
| Arecaceae | Cocos nucifera | 1 | COCNU_03G016610 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103704057, gene-LOC103708801 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_01.2389.V1.1, AsparagusV1_06.918.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri18G31754, Ftri1G06377, Ftri9G23247 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT1G15470.1, AT1G52730.2, AT3G15610.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10008159m.g.v1.0, Thhalv10011626m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 3 | Sp1g13830.v2.2, Sp1g39300.v2.2, Sp3g13900.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB03g026310.2N, BniB06g040860.2N, BniB07g003340.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq02G2808, Ceq06G0683 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G0707 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno06g02060, gene.Cymno12g00150 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0018s00023.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g32750 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-3257 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.423 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00015454 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G03918 |
| Poaceae | Echinochloa crus-galli | 8 | AH06.2195, AH07.776, BH06.2032, BH07.4035, BH07.911 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_2AG0105670, gene-QOZ80_2BG0159080 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.5HG0476660.1, HORVU.MOREX.r3.7HG0714120.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_004817, gene-QYE76_034769, gene-QYE76_034901 |
| Poaceae | Oryza coarctata | 3 | Oco04G005510, Oco11G012170, Oco12G012350 |
| Poaceae | Oryza sativa | 2 | LOC_Os02g11060.1, LOC_Os06g39760.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_04G080200, gene-BS78_10G181700 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0400620, Pt_Chr0702420 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr02G029680, Chr05G007340, Chr10G017440, Chr11G005060 |
| Poaceae | Thinopyrum elongatum | 2 | Tel5E01G328600, Tel7E01G602700 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC5AG031710, gene_TRIDC5BG033380 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS5A02G189200.2, TraesCS5B02G194400.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb276870_P001, Zm00001eb385880_P001 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-10113, nbis-gene-41091, nbis-gene-44033 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g15165, Zma_g30771, Zma_g33017 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG16.1469, evm.TU.LG26.194 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc03g24840, gene.Posoc09g12190 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_10_RagTag.1228 ... |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-28056, nbisL1-mrna-6863, nbisL1-mrna-6927 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-5919, nbisL1-mrna-6651 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-17014, nbisL1-mrna-7885 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000004l.361, evm.TU.utg000023l.180 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00004046, Maker00018831 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-16361, nbisL1-mrna-7302 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-18048, nbisL1-mrna-21230 |
| Salicaceae | Populus euphratica | 2 | populus_peu02832, populus_peu33698 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132633321 |
| Solanaceae | Solanum chilense | 1 | SOLCI003056100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107014720 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_8559, gene_8887 |
| Tamaricaceae | Tamarix chinensis | 1 | TC10G1644 |
| Zosteraceae | Zostera marina | 1 | Zosma05g07640.v3.1 |