Basic Information
Locus ID:
AgUnG00158
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Transducin WD40 repeat-like superfamily protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ctg1740 | 20223 | 25999 | + | AgUnG00158 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.74 | 54,004.85 Da | 52.04 | 85.69 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF69322 | Tricorn protease domain 2 | 103 | 472 | 1.44E-15 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 190 | 473 | 1.4E-7 | IPR015943 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G38630.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_017247603.1 | PREDICTED: uncharacterized protein LOC108218932 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A6L5BBH1 | Transcription factor WD40-like family OS=Apium graveolens OX=4045 GN=AG4045_014381 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 83.482758 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 77.08223 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 71.118347 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 72.405655 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 82.885551 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 75.566162 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 69.457085 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 50.557266 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 105.848198 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 101.127831 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 111.832703 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 114.667007 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 97.572113 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 88.239685 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 45.000744 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 40.671062 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 46.30862 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 49.419212 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 45.303814 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 44.166172 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 45.895943 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 64.707588 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 62.575706 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 62.828159 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 61.781418 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 56.474068 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 59.857861 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 53.271042 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 65.9869 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 23.877779 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 30.744921 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 24.697117 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 48.627743 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 49.399067 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 48.492306 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 35.70203 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 26.676722 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 27.788326 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 51.448494 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 28.714167 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 14.499002 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 26.180872 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 75.780479 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 218.630585 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 182.322113 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 31.125731 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 168.064011 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 63.34013 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 73.17614 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 75.594788 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg14169, jg2479, jg34060 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_24401 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah032187 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g038500 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg30088, Sbi_jg43536 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg18365 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00004141 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl66132, Sgl70450 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000013942, gene:ENSEOMG00000023770 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2AG0005270, CQ.Regalona.r1.2BG0004520 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30178390 |
| Apiaceae | Apium graveolens | 2 | Ag2G02635, AgUnG00158 |
| Arecaceae | Cocos nucifera | 5 | COCNU_03G004900, COCNU_08G002860, COCNU_12G005970 ... |
| Arecaceae | Phoenix dactylifera | 4 | gene-LOC103703310, gene-LOC103714813, gene-LOC103716952 ... |
| Asparagaceae | Asparagus officinalis | 6 | AsparagusV1_01.1534.V1.1, AsparagusV1_03.1367.V1.1 ... |
| Asteraceae | Flaveria trinervia | 6 | Ftri17G15794, Ftri18G07241, Ftri3G16471, Ftri8G05165 ... |
| Brassicaceae | Arabidopsis thaliana | 2 | AT2G38630.1, AT3G54190.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10010345m.g.v1.0, Thhalv10016625m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp4g20970.v2.2, Sp5g08210.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB06g057460.2N, BniB06g065590.2N, BniB08g068470.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq02G0001, Ceq08G0848 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl02G0006, Cgl08G0867 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g00900 |
| Hydrocharitaceae | Thalassia testudinum | 5 | gene.Thate01g16950, gene.Thate02g10690, gene.Thate02g10700 ... |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG01.822, evm.TU.LG02.1643 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00036293, Pov_00040693 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G02496 |
| Poaceae | Echinochloa crus-galli | 9 | AH05.2000, AH05.3512, AH07.3697, BH05.2140, BH05.3521 ... |
| Poaceae | Eleusine coracana subsp. coracana | 7 | gene-QOZ80_1BG0087790, gene-QOZ80_2AG0148130 ... |
| Poaceae | Hordeum vulgare | 4 | HORVU.MOREX.r3.1HG0070450.1, HORVU.MOREX.r3.3HG0297110.2 ... |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_055732 |
| Poaceae | Oryza coarctata | 8 | Oco01G023260, Oco02G024030, Oco03G023480, Oco04G024050 ... |
| Poaceae | Oryza sativa | 4 | LOC_Os01g60200.1, LOC_Os02g54090.1, LOC_Os05g40410.1 ... |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_04G297600, gene-BS78_08G075600 ... |
| Poaceae | Puccinellia tenuiflora | 6 | Pt_Chr0203013, Pt_Chr0203023, Pt_Chr0504543, Pt_Chr0601797 ... |
| Poaceae | Sporobolus alterniflorus | 13 | Chr03G018740, Chr04G015490, Chr05G027000, Chr06G016090 ... |
| Poaceae | Thinopyrum elongatum | 4 | Tel1E01G491100, Tel3E01G545400, Tel5E01G199400 ... |
| Poaceae | Triticum dicoccoides | 8 | gene_TRIDC1AG045110, gene_TRIDC1BG051040 ... |
| Poaceae | Triticum aestivum | 10 | TraesCS1A02G303300.1, TraesCS1B02G313700.1 ... |
| Poaceae | Zea mays | 5 | Zm00001eb138210_P005, Zm00001eb257070_P001 ... |
| Poaceae | Zoysia japonica | 5 | nbis-gene-14273, nbis-gene-30103, nbis-gene-34585 ... |
| Poaceae | Zoysia macrostachya | 4 | Zma_g14563, Zma_g17287, Zma_g25847, Zma_g26982 |
| Portulacaceae | Portulaca oleracea | 5 | evm.TU.LG04.760, evm.TU.LG05.443, evm.TU.LG10.79 ... |
| Posidoniaceae | Posidonia oceanica | 3 | gene.Posoc02g27510, gene.Posoc02g33140, gene.Posoc07g10650 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_1_RagTag.1055 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-3958 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-3103 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-21151 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000016l.877 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00016819 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-11061 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-13266 |
| Salicaceae | Populus euphratica | 4 | populus_peu11552, populus_peu16382, populus_peu19108 ... |
| Solanaceae | Lycium barbarum | 4 | gene-LOC132611181, gene-LOC132631586, gene-LOC132637188 ... |
| Solanaceae | Solanum chilense | 2 | SOLCI000645100, SOLCI006999500 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107014908, gene-LOC107023918 |
| Tamaricaceae | Reaumuria soongarica | 3 | STRG.1593_chr01_-, STRG.26779_chr04_-, STRG.8408_chr05_+ |
| Tamaricaceae | Tamarix chinensis | 2 | TC02G1723, TC07G0924 |
| Zosteraceae | Zostera marina | 18 | Zosma01g11900.v3.1, Zosma01g14070.v3.1, Zosma02g02100.v3.1 ... |