Basic Information
Locus ID:
AgUnG00145
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Ribulose bisphosphate carboxylase oxygenase activase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ctg1727 | 81290 | 86353 | + | AgUnG00145 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.99 | 27,948.38 Da | 41.32 | 83.51 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00004 | ATPase family associated with various cellular activities (AAA) | 2 | 125 | 2.2E-7 | IPR003959 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 2 | 150 | 1.14E-10 | IPR027417 |
| Gene3D | G3DSA:1.10.8.1070 | - | 128 | 243 | 5.5E-38 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 1 | 127 | 9.5E-23 | IPR027417 |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G73110.2 | - | 0 |
| RefSeq | XP_017215876.1 | PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic [Daucus carota subsp. sativus] | 0 |
| Q9ZT00 | Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Zea mays OX=4577 GN=RCA1 PE=2 SV=3 | 0 | |
| TrEMBL | A0A6L5BAT4 | Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Apium graveolens OX=4045 GN=AG4045_007676 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 9.092399 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 8.998301 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 8.128195 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 10.935336 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 7.967447 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 11.645629 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 7.602533 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 5.627426 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 18.006268 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 18.173338 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 21.324593 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 22.431065 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 25.571205 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 18.448902 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 13.727565 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 17.990664 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 21.409986 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 31.634457 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 46.37101 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 20.346327 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 28.222141 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 8.427225 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 7.040525 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 11.406692 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 14.701134 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 38.487644 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 28.820068 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 47.384182 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 34.914196 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 14.859467 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 13.433485 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 9.960876 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 11.345775 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 8.745524 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 14.181867 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 10.163828 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 9.946116 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 8.96071 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 40.467815 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 66.807236 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 105.076569 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 9.9369 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 7.69963 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 4.028621 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 6.891546 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 8.785447 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 5.60913 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 10.178664 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 6.246536 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 4.109667 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg18354 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_11228 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah025041 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_8g189100 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg25764, Sbi_jg9591 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg19049 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00020494 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl43896, Sgl48664 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000015501, gene:ENSEOMG00000032918 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30130830 |
| Apiaceae | Apium graveolens | 1 | AgUnG00145 |
| Arecaceae | Cocos nucifera | 1 | COCNU_11G012940 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103721519 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_05.2483.V1.1, AsparagusV1_05.2484.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri2G13139 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G73110.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10018573m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g28070.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB03g051420.2N |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G0667 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g09080 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0522s00002.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g29990 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-843 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.628 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00001794, Pov_00020082, Pov_00041655 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G18221 |
| Poaceae | Echinochloa crus-galli | 3 | AH09.2575, BH09.2799, CH09.2999 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0300950, gene-QOZ80_4BG0331680 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0202450.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_007949, gene-QYE76_047048 |
| Poaceae | Oryza coarctata | 2 | Oco07G018000, Oco08G017360 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g56320.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G266600 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0300543, Pt_Chr0300565 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr25G001570, Chr30G001570 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G847900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG070490, gene_TRIDC2BG076210 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G501200.1, TraesCS2B02G529300.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb067660_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-6080 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g22134 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG04.2605, evm.TU.LG08.187 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g20140 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_18_RagTag.60 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-28500, nbisL1-mrna-28501 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-16383 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-14091 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000023l.285 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00018880 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-14997 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-21463 |
| Salicaceae | Populus euphratica | 1 | populus_peu04157 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132633111 |
| Solanaceae | Solanum chilense | 1 | SOLCI001626800 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107014605 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.15031_chr08_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC05G0786 |
| Zosteraceae | Zostera marina | 1 | Zosma02g17850.v3.1 |