Basic Information
Locus ID:
AgUnG00124
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
EIN3-binding F-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ctg1631 | 155138 | 157560 | - | AgUnG00124 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.95 | 69,972.06 Da | 42.30 | 107.74 | 0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13516 | Leucine Rich repeat | 486 | 508 | 0.031 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 566 | 588 | 0.096 | IPR001611 |
| Pfam | PF00646 | F-box domain | 63 | 104 | 2.1E-5 | IPR001810 |
| Pfam | PF13516 | Leucine Rich repeat | 222 | 245 | 0.16 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 274 | 296 | 1.1 | IPR001611 |
| SUPERFAMILY | SSF81383 | F-box domain | 59 | 101 | 5.49E-7 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 182 | 424 | 1.02E-36 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 350 | 610 | 3.92E-36 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 454 | 657 | 8.3E-35 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 261 | 453 | 2.6E-33 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 139 | 260 | 3.3E-23 | IPR032675 |
| SMART | SM00367 | LRR_CC_2 | 460 | 485 | 50.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 222 | 247 | 1.3E-4 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 326 | 351 | 350.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 406 | 431 | 48.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 380 | 405 | 0.069 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 274 | 299 | 5.3E-4 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 248 | 273 | 0.0015 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 513 | 538 | 35.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 566 | 590 | 0.018 | IPR006553 |
| SMART | SM00256 | fbox_2 | 67 | 108 | 9.5E-4 | IPR001810 |
| SMART | SM00367 | LRR_CC_2 | 486 | 511 | 2.1 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 540 | 565 | 0.071 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 196 | 221 | 0.39 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 618 | 643 | 190.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 592 | 617 | 0.082 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 354 | 379 | 12.0 | IPR006553 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G25350.1 | EIN3-binding F box protein 2. Arabidopsis thaliana EIN3-binding F-box protein 2 (EBF2) mRNA. Part of the SCF complex, it is located in the nucleus and is involved in the ethylene-response pathway. | 0 |
| RefSeq | XP_017247470.1 | PREDICTED: EIN3-binding F-box protein 2-like [Daucus carota subsp. sativus] | 0 |
| Q708Y0 | EIN3-binding F-box protein 2 OS=Arabidopsis thaliana OX=3702 GN=EBF2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6L5BBV5 | F-box domain-containing protein OS=Apium graveolens OX=4045 GN=AG4045_006641 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 22.107265 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 28.399794 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 31.847822 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 21.931227 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 19.803154 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 64.033424 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 48.858711 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 49.508297 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 88.863037 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 81.292961 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 83.739021 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 80.773781 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 81.89222 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 69.873055 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 16.62528 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 29.112453 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 8.258232 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 16.490005 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 71.52285 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 32.886742 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 20.374273 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 66.673279 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 49.459442 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 48.310268 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 71.266273 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 22.366825 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 32.628712 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 20.275013 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 13.504475 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 6.398697 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 10.749722 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 9.028356 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 20.031757 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 16.060568 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 15.913667 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 10.757335 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 7.653879 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 7.031095 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 55.587833 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 142.929611 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 141.154343 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 122.081543 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 60.510143 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 71.183006 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 103.882935 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 44.963585 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 33.906704 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 10.810157 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 16.038351 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 16.83762 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology