Basic Information
Locus ID:
AgUnG00116
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ctg1631 | 18511 | 30496 | - | AgUnG00116 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.04 | 144,705.97 Da | 50.22 | 92.63 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 8 | 568 | 3.14E-19 | IPR011047 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 517 | 858 | 1.12E-20 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 472 | 678 | 1.1E-7 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 71 | 450 | 3.8E-13 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 700 | 883 | 6.9E-11 | IPR015943 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 653 | 693 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 424 | 444 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 653 | 679 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 26 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G33530.4 | - | 0 |
| RefSeq | XP_017247424.1 | PREDICTED: WD repeat-containing protein 11 [Daucus carota subsp. sativus] | 0 |
| F1QEB7 | WD repeat-containing protein 11 OS=Danio rerio OX=7955 GN=wdr11 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6L5BFG6 | Transducin family protein / WD-40 repeat family protein OS=Apium graveolens OX=4045 GN=AG4045_006640 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 17.824505 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 12.949293 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 10.449395 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 10.897388 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 11.703943 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 7.15846 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 6.957136 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 4.880598 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 28.951365 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 30.495747 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 30.861671 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 30.179262 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 27.289633 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 24.195141 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 15.983635 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 20.058022 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 17.738012 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 22.42461 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 16.831875 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 15.054418 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 17.221024 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 17.732744 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 19.17795 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 18.858339 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 18.631279 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 22.19379 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 19.532494 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 14.724416 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 21.960733 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 1.867448 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 2.731065 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 2.39783 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 6.884587 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 8.666019 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 7.759794 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 4.829947 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 1.293278 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 2.422875 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 13.496426 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 6.084699 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 3.403509 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 5.772335 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 7.246624 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 11.566347 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 9.498318 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 7.14444 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 12.670022 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 18.156061 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 18.1786 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 18.006359 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg31695 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_8968 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah014314 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_8g194040 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg25653, Sbi_jg9473 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg19141 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00010986 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl41998, Sgl46774 |
| Amaranthaceae | Chenopodium album | 9 | gene:ENSEOMG00000010207, gene:ENSEOMG00000029375 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2AG0000250, CQ.Regalona.r1.8AG0022240 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30254930 |
| Apiaceae | Apium graveolens | 2 | Ag2G01814, AgUnG00116 |
| Arecaceae | Cocos nucifera | 1 | COCNU_06G000270 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103720999 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_03.3044.V1.1, AsparagusV1_03.3045.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri15G05603, Ftri7G16487 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT2G26610.1, AT3G33530.3 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10011188m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 3 | Sp1g38940.v2.2, Sp1g41730.v2.2, Sp4g09400.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB04g053490.2N, BniB08g032500.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G0600 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G0620 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno18g00410 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0240s00019.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate07g15490 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG03.1680, evm.TU.LG07.937 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00005512 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G03260, Lb6G31726 |
| Poaceae | Echinochloa crus-galli | 4 | AH01.2470, AH07.322, BH07.420, CH03.4498 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0101060, gene-QOZ80_2BG0154460 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0556100.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_020180 |
| Poaceae | Oryza coarctata | 2 | Oco03G002070, Oco04G001910 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g04440.2 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G032400 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0201544, Pt_Chr0201583 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr06G035200, Chr0G011630, Chr15G026550, Chr16G001620 |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G235400 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC6AG013570, gene_TRIDC6BG019050 |
| Poaceae | Triticum aestivum | 3 | TraesCS6A02G104800.1, TraesCS6B02G134000.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb231770_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-29992, nbis-gene-29993 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g14920 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG02.40, evm.TU.LG16.1622, evm.TU.LG26.45 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc07g14480 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_4_RagTag.2295, evm.TU.Scaffold_4_RagTag.2296 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-25144 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-20042 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-5042 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000008l.1349 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00000611 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-1835 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-22326, nbisL1-mrna-22327 |
| Salicaceae | Populus euphratica | 1 | populus_peu05746 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132603153, gene-LOC132609253 |
| Solanaceae | Solanum chilense | 1 | SOLCI002474700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107026090 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_8076 |
| Tamaricaceae | Tamarix chinensis | 1 | TC10G1293 |
| Zosteraceae | Zostera marina | 1 | Zosma02g18730.v3.1 |