halophFGD

Basic Information

Locus ID: AgUnG00091

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Belongs to the DEAD box helicase family

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
ctg1513	41005	45619	+	AgUnG00091

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.30	46,595.82 Da	44.16	91.98	-0.18

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd18787	SF2_C_DEAD	253	383	6.94316E-61	-
CDD	cd17939	DEADc_EIF4A	44	242	5.92659E-136	-
Pfam	PF00270	DEAD/DEAH box helicase	65	226	6.7E-40	IPR011545
Pfam	PF00271	Helicase conserved C-terminal domain	266	374	6.8E-29	IPR001650
SUPERFAMILY	SSF52540	P-loop containing nucleoside triphosphate hydrolases	109	394	4.66E-75	IPR027417
Gene3D	G3DSA:3.40.50.300	-	30	247	8.8E-67	IPR027417
Gene3D	G3DSA:3.40.50.300	-	248	413	7.9E-58	IPR027417
SMART	SM00487	ultradead3	59	256	5.2E-56	IPR014001
SMART	SM00490	helicmild6	293	374	1.5E-31	IPR001650
ProSiteProfiles	PS51194	Superfamilies 1 and 2 helicase C-terminal domain profile.	252	413	25.616428	IPR001650
ProSiteProfiles	PS51192	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	71	241	29.220387	IPR014001
ProSiteProfiles	PS51195	DEAD-box RNA helicase Q motif profile.	40	68	10.40907	IPR014014
ProSitePatterns	PS00039	DEAD-box subfamily ATP-dependent helicases signature.	187	195	-	IPR000629

Gene Ontology

Molecular Function:

GO:0003676 (nucleic acid binding) GO:0003724 (RNA helicase activity) GO:0005524 (ATP binding)

KEGG Pathway

KO Term:

K03257 (translation initiation factor 4A)

Pathway:

ko03013 (Nucleocytoplasmic transport) map03013 (Nucleocytoplasmic transport)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G13920.1	eukaryotic translation initiation factor 4A1. eukaryotic translation initiation factor 4A-1
RefSeq	XP_017229733.1	PREDICTED: eukaryotic initiation factor 4A-2-like [Daucus carota subsp. sativus]
Swiss-Prot	P41379	Eukaryotic initiation factor 4A-2 OS=Nicotiana plumbaginifolia OX=4092 PE=2 SV=1
TrEMBL	A0A6L5BBY1	Eukaryotic initiation factor 4A-11 OS=Apium graveolens OX=4045 GN=AG4045_014591 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	148.593826	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	113.818726	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	116.208908	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	114.298729	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	120.154808	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	210.413055	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	120.353683	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	129.952835	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	305.543518	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	292.417114	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	314.147705	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	313.916748	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	269.484924	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	239.145248	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	192.722549	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	205.549179	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	259.6315	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	180.868942	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	204.343582	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	185.8918	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	183.31929	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	353.648712	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	432.388641	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	354.841187	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	351.359436	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	256.628448	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	259.282654	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	210.56575	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	259.801727	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	326.466248		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	370.386169		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	379.258301		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	420.686188		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	284.989746		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	376.617462		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	381.598267		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	329.039032		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	369.990784		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	397.186676	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	175.447388	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	87.48307	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	260.37735	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	487.251221	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	857.016296	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	707.969055	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	273.46283	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	534.578613	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	253.710938	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	231.104141	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	228.997559	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	8	jg18030, jg23950, jg27270, jg36647, jg36903, jg4590, jg4640 ... jg7945
Aizoaceae	Mesembryanthemum crystallinum	4	gene_6755, gene_8081, gene_8082, gene_9431
Amaranthaceae	Atriplex hortensis	2	Ah015581, Ah034500
Amaranthaceae	Beta vulgaris	3	BVRB_2g034400, BVRB_8g189830, BVRB_9g203030
Amaranthaceae	Salicornia bigelovii	6	Sbi_jg19755, Sbi_jg19756, Sbi_jg23471, Sbi_jg23473 ... Sbi_jg59412, Sbi_jg63236
Amaranthaceae	Salicornia europaea	3	Seu_jg17278, Seu_jg17279, Seu_jg23657
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00011237, GOSA_00028107, GOSA_00028109
Amaranthaceae	Suaeda glauca	4	Sgl43089, Sgl47901, Sgl63656, Sgl68153
Amaranthaceae	Chenopodium album	10	gene:ENSEOMG00000011237, gene:ENSEOMG00000016890 ... gene:ENSEOMG00000018752, gene:ENSEOMG00000019246, gene:ENSEOMG00000019465, gene:ENSEOMG00000020731, gene:ENSEOMG00000031858, gene:ENSEOMG00000045672, gene:ENSEOMG00000050432, gene:ENSEOMG00000051256
Amaranthaceae	Chenopodium quinoa	6	CQ.Regalona.r1.2AG0014060, CQ.Regalona.r1.2AG0014070 ... CQ.Regalona.r1.2BG0016020, CQ.Regalona.r1.2BG0016030, CQ.Regalona.r1.8AG0013490, CQ.Regalona.r1.8BG0014820
Anacardiaceae	Pistacia vera	5	pistato.v30117410, pistato.v30224710, pistato.v30224730 ... pistato.v30259600, pistato.v30261340
Apiaceae	Apium graveolens	7	Ag5G01561, Ag7G00390, Ag7G01853, Ag8G00261, Ag8G01983 ... AgUnG00091, AgUnG00092
Arecaceae	Cocos nucifera	6	COCNU_02G001330, COCNU_02G019540, COCNU_03G015520 ... COCNU_09G006150, COCNU_11G013450, COCNU_11G013460
Arecaceae	Phoenix dactylifera	7	gene-LOC103702037, gene-LOC103709577, gene-LOC103713107 ... gene-LOC103713109, gene-LOC103715524, gene-LOC103717373, gene-LOC103723891
Asparagaceae	Asparagus officinalis	4	AsparagusV1_01.2362.V1.1, AsparagusV1_01.621.V1.1 ... AsparagusV1_05.2352.V1.1, AsparagusV1_06.1043.V1.1
Asteraceae	Flaveria trinervia	7	Ftri13G30554, Ftri15G17613, Ftri3G12718, Ftri3G20538 ... Ftri4G15456, Ftri7G08567, Ftri8G25313
Brassicaceae	Arabidopsis thaliana	5	AT1G51380.1, AT1G54270.1, AT1G72730.1, AT3G13920.2 ... AT3G19760.1
Brassicaceae	Eutrema salsugineum	5	Thhalv10011528m.g.v1.0, Thhalv10011544m.g.v1.0 ... Thhalv10018626m.g.v1.0, Thhalv10020824m.g.v1.0, Thhalv10020832m.g.v1.0
Brassicaceae	Schrenkiella parvula	5	Sp1g38030.v2.2, Sp1g40700.v2.2, Sp3g12160.v2.2 ... Sp3g17780.v2.2, Sp5g27790.v2.2
Brassicaceae	Brassica nigra	13	BniB01g044200.2N, BniB01g051250.2N, BniB01g055170.2N ... BniB02g063060.2N, BniB03g050960.2N, BniB05g070020.2N, BniB06g026370.2N, BniB07g001610.2N, BniB07g004620.2N, BniB07g030750.2N, BniB07g030780.2N, BniB07g051010.2N, BniB07g055250.2N
Casuarinaceae	Casuarina equisetifolia	10	Ceq01G0301, Ceq01G0309, Ceq02G0842, Ceq03G2284, Ceq05G0696 ... Ceq06G0836, Ceq06G1704, Ceq06G2354, Ceq09G0627, Ceq09G0628
Casuarinaceae	Casuarina glauca	10	Cgl01G0321, Cgl02G0856, Cgl03G2420, Cgl05G0707, Cgl06G0861 ... Cgl06G1766, Cgl06G2478, Cgl09G0671, Cgl09G0672, Cgl09G0684
Cymodoceaceae	Cymodocea nodosa	3	gene.Cymno12g04520, gene.Cymno13g02290, gene.Cymno17g04600
Dunaliellaceae	Dunaliella salina	3	Dusal.0006s00020.v1.0, Dusal.0552s00009.v1.0 ... Dusal.0888s00003.v1.0
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate01g03840, gene.Thate02g00760, gene.Thate05g18780
Malvaceae	Hibiscus hamabo Siebold & Zucc.	5	nbisL1-mrna-231, nbisL1-mrna-3338, nbisL1-mrna-4598 ... nbisL1-mrna-7482, nbisL1-mrna-9392
Nitrariaceae	Nitraria sibirica	4	evm.TU.LG01.89, evm.TU.LG03.943, evm.TU.LG07.1262 ... evm.TU.LG07.652
Plantaginaceae	Plantago ovata	3	Pov_00003711, Pov_00013441, Pov_00015332
Plumbaginaceae	Limonium bicolor	9	Lb0G36968, Lb2G08398, Lb2G14201, Lb2G14216, Lb3G16956 ... Lb3G16957, Lb3G18035, Lb3G18041, Lb4G21541
Poaceae	Echinochloa crus-galli	12	AH06.2865, AH07.361, AH07.4042, AH07.880, BH06.2663 ... BH07.1009, BH07.3856, CH01.1256, CH03.4462, CH06.2976, CH07.3921, CH07.761
Poaceae	Eleusine coracana subsp. coracana	9	gene-QOZ80_2AG0101490, gene-QOZ80_2AG0151600 ... gene-QOZ80_2BG0154870, gene-QOZ80_2BG0206970, gene-QOZ80_4AG0307350, gene-QOZ80_5AG0399360, gene-QOZ80_5BG0448050, gene-QOZ80_6AG0549840, gene-QOZ80_6BG0503410
Poaceae	Hordeum vulgare	5	HORVU.MOREX.r3.2HG0210840.1, HORVU.MOREX.r3.6HG0558540.1 ... HORVU.MOREX.r3.6HG0633530.1, HORVU.MOREX.r3.7HG0702610.1, HORVU.MOREX.r3.7HG0727510.1
Poaceae	Lolium multiflorum	7	gene-QYE76_006390, gene-QYE76_006463, gene-QYE76_008284 ... gene-QYE76_020352, gene-QYE76_021631, gene-QYE76_035484, gene-QYE76_035764
Poaceae	Oryza coarctata	11	Oco01G015450, Oco02G015790, Oco03G002380, Oco03G005800 ... Oco03G005810, Oco04G002300, Oco04G006020, Oco06G017810, Oco11G016450, Oco12G016700, Oco21G004410
Poaceae	Paspalum vaginatum	5	gene-BS78_03G064300, gene-BS78_03G064700 ... gene-BS78_04G036500, gene-BS78_04G090300, gene-BS78_10G253900
Poaceae	Puccinellia tenuiflora	3	Pt_Chr0401086, Pt_Chr0604848, Pt_Chr0605387
Poaceae	Sporobolus alterniflorus	13	Chr02G032810, Chr04G019820, Chr05G001030, Chr06G020750 ... Chr06G035000, Chr09G026920, Chr0G010140, Chr10G021450, Chr11G001120, Chr13G000230, Chr15G026290, Chr19G007120, Chr27G009790
Poaceae	Thinopyrum elongatum	8	Tel2E01G942100, Tel5E01G690000, Tel6E01G254100 ... Tel6E01G368300, Tel6E01G775100, Tel6E01G775300, Tel7E01G532700, Tel7E01G703700
Poaceae	Triticum dicoccoides	9	gene_TRIDC6AG015330, gene_TRIDC6AG027230 ... gene_TRIDC6AG027280, gene_TRIDC6AG061100, gene_TRIDC6BG021100, gene_TRIDC6BG033410, gene_TRIDC6BG071460, gene_TRIDC7AG058390, gene_TRIDC7BG051060
Poaceae	Triticum aestivum	19	TraesCS2A02G552800.1, TraesCS2B02G584200.1 ... TraesCS2D02G553400.1, TraesCS2D02G554300.1, TraesCS6A02G116200.1, TraesCS6A02G186600.1, TraesCS6A02G186800.1, TraesCS6A02G416700.1, TraesCS6B02G144000.1, TraesCS6B02G217700.1, TraesCS6B02G217800.1, TraesCS6B02G472700.1, TraesCS6D02G105000.1, TraesCS6D02G173700.3, TraesCS6D02G401900.1, TraesCS7A02G310000.1, TraesCS7A02G419400.1, TraesCS7B02G320000.1, TraesCS7D02G412200.1
Poaceae	Zea mays	6	Zm00001eb190630_P001, Zm00001eb226920_P001 ... Zm00001eb232200_P002, Zm00001eb240040_P001, Zm00001eb259470_P001, Zm00001eb272920_P004
Poaceae	Zoysia japonica	6	nbis-gene-29965, nbis-gene-33746, nbis-gene-34308 ... nbis-gene-40699, nbis-gene-47426, nbis-gene-9633
Poaceae	Zoysia macrostachya	6	Zma_g12187, Zma_g14948, Zma_g17479, Zma_g26194, Zma_g31084 ... Zma_g33349
Portulacaceae	Portulaca oleracea	9	evm.TU.LG03.1988, evm.TU.LG05.2220, evm.TU.LG07.802 ... evm.TU.LG08.1559, evm.TU.LG14.287, evm.TU.LG15.127, evm.TU.LG19.20, evm.TU.LG22.453, evm.TU.LG24.250
Posidoniaceae	Posidonia oceanica	2	gene.Posoc02g10950, gene.Posoc10g04890
Rhizophoraceae	Bruguiera sexangula	6	evm.TU.Scaffold_10_RagTag.1375 ... evm.TU.Scaffold_10_RagTag.694, evm.TU.Scaffold_15_RagTag.341, evm.TU.Scaffold_17_RagTag.669, evm.TU.Scaffold_18_RagTag.687, evm.TU.Scaffold_4_RagTag.1818
Rhizophoraceae	Carallia pectinifolia	10	nbisL1-mrna-13797, nbisL1-mrna-17178, nbisL1-mrna-23352 ... nbisL1-mrna-25759, nbisL1-mrna-26612, nbisL1-mrna-27630, nbisL1-mrna-27668, nbisL1-mrna-27671, nbisL1-mrna-27709, nbisL1-mrna-7111
Rhizophoraceae	Ceriops tagal	5	nbisL1-mrna-14506, nbisL1-mrna-7676, nbisL1-mrna-8093 ... nbisL1-mrna-8888, nbisL1-mrna-8954
Rhizophoraceae	Ceriops zippeliana	5	nbisL1-mrna-19994, nbisL1-mrna-4611, nbisL1-mrna-8066 ... nbisL1-mrna-8747, nbisL1-mrna-8945
Rhizophoraceae	Kandelia candel	6	evm.TU.utg000001l.210, evm.TU.utg000004l.50 ... evm.TU.utg000008l.1027, evm.TU.utg000013l.359, evm.TU.utg000023l.38, evm.TU.utg000033l.487
Rhizophoraceae	Kandelia obovata	6	Maker00000055, Maker00004182, Maker00004381, Maker00004787 ... Maker00014572, Maker00018900
Rhizophoraceae	Rhizophora apiculata	6	nbisL1-mrna-10750, nbisL1-mrna-13992, nbisL1-mrna-14858 ... nbisL1-mrna-16464, nbisL1-mrna-18333, nbisL1-mrna-3900
Rhizophoraceae	Rhizophora mangle	7	nbisL1-mrna-1116, nbisL1-mrna-14378, nbisL1-mrna-14846 ... nbisL1-mrna-22898, nbisL1-mrna-2625, nbisL1-mrna-8022, nbisL1-mrna-8172
Salicaceae	Populus euphratica	11	populus_peu02609, populus_peu02613, populus_peu12625 ... populus_peu13947, populus_peu22056, populus_peu22065, populus_peu23152, populus_peu24345, populus_peu26593, populus_peu28337, populus_peu37881
Solanaceae	Lycium barbarum	7	gene-LOC132604232, gene-LOC132604234, gene-LOC132613923 ... gene-LOC132619740, gene-LOC132635930, gene-LOC132640847, gene-LOC132645464
Solanaceae	Solanum chilense	5	SOLCI000318900, SOLCI001353000, SOLCI002413600 ... SOLCI003389300, SOLCI003577100
Solanaceae	Solanum pennellii	6	gene-LOC107004776, gene-LOC107007006, gene-LOC107007007 ... gene-LOC107022595, gene-LOC107024598, gene-LOC107028541
Tamaricaceae	Reaumuria soongarica	6	STRG.21618_chr08_-, STRG.32344_chr09_-, STRG.8158_chr05_- ... gene_14265, gene_3999, gene_505
Tamaricaceae	Tamarix chinensis	5	TC02G1339, TC05G0391, TC05G1664, TC06G2628, TC11G1425
Zosteraceae	Zostera marina	4	Zosma04g15770.v3.1, Zosma04g15790.v3.1, Zosma05g19360.v3.1 ... Zosma06g26830.v3.1