halophFGD

Basic Information

Locus ID: AgUnG00088

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: VQ motif

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
ctg1477	146842	147759	-	AgUnG00088

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.57	23,988.16 Da	63.41	52.53	-0.71

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF05678	VQ motif	71	94	4.2E-10	IPR008889
MobiDBLite	mobidb-lite	consensus disorder prediction	201	221	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	43	71	-	-

Best hit

Source	Best Hit ID	Description
TAIR	AT3G22160.1	VQ motif-containing protein.
RefSeq	XP_017248054.1	PREDICTED: VQ motif-containing protein 22-like [Daucus carota subsp. sativus]
Swiss-Prot	Q9LIE6	VQ motif-containing protein 22 OS=Arabidopsis thaliana OX=3702 GN=VQ22 PE=2 SV=1
TrEMBL	A0A6L5BDL1	VQ domain-containing protein OS=Apium graveolens OX=4045 GN=AG4045_030413 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	40.410873	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	11.459699	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	1.51448	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	5.109614	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	4.865222	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	4.545207	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	2.860338	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	2.110706	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	55.366608	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	44.734959	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	45.289223	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	23.224545	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	29.351629	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	19.347748	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	9.692043	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	13.765519	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	2.910417	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	43.379009	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	25.624664	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	68.637154	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	84.8228	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	30.367439	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	24.516281	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	23.080919	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	39.627472	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	12.182143	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	8.242145	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	9.263685	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	6.361176	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	6.175611		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	2.081285		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	3.54097		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	116.023071		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	56.808704		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	255.990875		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	73.195221		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	29.968294		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	49.172432		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	30.544428	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	26.173203	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	18.510786	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	212.413162	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	112.690498	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	41.126167	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	17.812174	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	194.423019	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	22.542007	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	33.510166	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	18.096273	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	15.128669	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	11	jg10829, jg17022, jg19028, jg20928, jg20929, jg21106, jg6118 ... jg22632, jg31134, jg37473, jg39502
Aizoaceae	Mesembryanthemum crystallinum	4	gene_23314, gene_23709, gene_25087, gene_6189
Amaranthaceae	Atriplex hortensis	4	Ah021725, Ah023946, Ah027043, Ah027320
Amaranthaceae	Beta vulgaris	4	BVRB_1g009390, BVRB_3g061210, BVRB_6g132260, BVRB_6g135250
Amaranthaceae	Salicornia bigelovii	7	Sbi_jg12701, Sbi_jg13508, Sbi_jg19477, Sbi_jg29281 ... Sbi_jg31307, Sbi_jg52379, Sbi_jg53207
Amaranthaceae	Salicornia europaea	4	Seu_jg25596, Seu_jg6442, Seu_jg8690, Seu_jg9475
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00010321, GOSA_00022260
Amaranthaceae	Suaeda glauca	10	Sgl11760, Sgl11922, Sgl17249, Sgl33467, Sgl33503, Sgl33561 ... Sgl38851, Sgl39103, Sgl71840, Sgl75401
Amaranthaceae	Chenopodium album	9	gene:ENSEOMG00000000297, gene:ENSEOMG00000001281 ... gene:ENSEOMG00000001977, gene:ENSEOMG00000012991, gene:ENSEOMG00000024736, gene:ENSEOMG00000025794, gene:ENSEOMG00000030415, gene:ENSEOMG00000033896, gene:ENSEOMG00000049817
Amaranthaceae	Chenopodium quinoa	8	CQ.Regalona.r1.1AG0011930, CQ.Regalona.r1.1BG0013970 ... CQ.Regalona.r1.3AG0020620, CQ.Regalona.r1.3BG0021440, CQ.Regalona.r1.6AG0021680, CQ.Regalona.r1.6AG0024160, CQ.Regalona.r1.6BG0022880, CQ.Regalona.r1.6BG0025500
Anacardiaceae	Pistacia vera	1	pistato.v30197330
Apiaceae	Apium graveolens	7	Ag11G03407, Ag3G01703, Ag4G02732, Ag7G00471, Ag7G02438 ... Ag9G02517, AgUnG00088
Arecaceae	Cocos nucifera	6	COCNU_03G006800, COCNU_13G002930, contig69545365G000010 ... scaffold001054G000070, scaffold001054G000080, scaffold018973G000050
Arecaceae	Phoenix dactylifera	7	gene-LOC103699546, gene-LOC103701748, gene-LOC103711263 ... gene-LOC103714971, gene-LOC103720247, gene-LOC103721073, gene-LOC120107366
Asparagaceae	Asparagus officinalis	1	AsparagusV1_06.131.V1.1
Asteraceae	Flaveria trinervia	7	Ftri13G24412, Ftri14G34012, Ftri16G06113, Ftri18G07277 ... Ftri18G18234, Ftri1G27924, Ftri2G06114
Brassicaceae	Arabidopsis thaliana	5	AT1G35830.1, AT3G22160.1, AT4G15120.1, AT4G39720.1 ... AT5G65170.1
Brassicaceae	Eutrema salsugineum	5	Thhalv10001873m.g.v1.0, Thhalv10004427m.g.v1.0 ... Thhalv10021568m.g.v1.0, Thhalv10025887m.g.v1.0, Thhalv10026342m.g.v1.0
Brassicaceae	Schrenkiella parvula	5	Sp1g30500.v2.2, Sp2g28260.v2.2, Sp3g19970.v2.2 ... Sp7g13350.v2.2, Sp7g36170.v2.2
Brassicaceae	Brassica nigra	9	BniB01g040600.2N, BniB03g015000.2N, BniB04g000960.2N ... BniB05g000310.2N, BniB05g021040.2N, BniB06g013480.2N, BniB07g032240.2N, BniB07g043160.2N, BniB07g049480.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq04G1367, Ceq04G1368
Casuarinaceae	Casuarina glauca	1	Cgl04G1529
Cymodoceaceae	Cymodocea nodosa	4	gene.Cymno02g02750, gene.Cymno09g04870, gene.Cymno11g06700 ... gene.Cymno13g03610
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate04g00360, gene.Thate05g28250, gene.Thate07g04500
Malvaceae	Hibiscus hamabo Siebold & Zucc.	4	nbisL1-mrna-10166, nbisL1-mrna-1816, nbisL1-mrna-3061 ... nbisL1-mrna-8357
Nitrariaceae	Nitraria sibirica	4	evm.TU.LG01.1612, evm.TU.LG02.672, evm.TU.LG06.1032 ... evm.TU.LG12.362
Plantaginaceae	Plantago ovata	8	Pov_00003740, Pov_00005197, Pov_00012912, Pov_00014536 ... Pov_00020961, Pov_00031709, Pov_00034554, Pov_00037289
Plumbaginaceae	Limonium bicolor	2	Lb5G27783, Lb5G27858
Poaceae	Echinochloa crus-galli	18	AH01.3439, AH03.1726, AH03.3753, AH06.2600, AH07.518 ... AH08.1333, BH01.3793, BH03.1889, BH03.4032, BH07.1639, BH07.644, BH08.1532, CH01.4046, CH03.2064, CH03.4303, CH06.2686, CH07.522, CH08.1594
Poaceae	Eleusine coracana subsp. coracana	11	gene-QOZ80_2AG0103110, gene-QOZ80_2BG0156420 ... gene-QOZ80_3BG0277680, gene-QOZ80_6AG0533610, gene-QOZ80_6AG0547570, gene-QOZ80_6BG0486660, gene-QOZ80_6BG0501200, gene-QOZ80_7AG0577940, gene-QOZ80_7BG0609260, gene-QOZ80_8AG0629620, gene-QOZ80_8BG0658420
Poaceae	Hordeum vulgare	4	HORVU.MOREX.r3.3HG0222180.1.CDS1 ... HORVU.MOREX.r3.5HG0476460.1.CDS1, HORVU.MOREX.r3.6HG0571070.1.CDS1, HORVU.MOREX.r3.7HG0738010.1.CDS1
Poaceae	Lolium multiflorum	6	gene-QYE76_004823, gene-QYE76_020816, gene-QYE76_036290 ... gene-QYE76_036303, gene-QYE76_039531, gene-QYE76_067559
Poaceae	Oryza coarctata	11	Oco03G003570, Oco04G003520, Oco05G014940, Oco06G015330 ... Oco11G014850, Oco12G014950, Oco14G013860, Oco15G007980, Oco16G007710, Oco17G003520, Oco18G003530
Poaceae	Oryza sativa	6	LOC_Os02g07690.1, LOC_Os03g26990.1, LOC_Os06g45570.1 ... LOC_Os07g43140.1, LOC_Os08g31660.1, LOC_Os09g20460.1
Poaceae	Paspalum vaginatum	6	gene-BS78_01G330600, gene-BS78_02G166600 ... gene-BS78_02G356400, gene-BS78_04G053700, gene-BS78_07G130500, gene-BS78_10G220000
Poaceae	Puccinellia tenuiflora	1	Pt_Chr0702410
Poaceae	Sporobolus alterniflorus	18	Chr02G031560, Chr04G012590, Chr05G009400, Chr06G034310 ... Chr07G011990, Chr10G011260, Chr10G019870, Chr11G002770, Chr11G011020, Chr14G012950, Chr15G025570, Chr16G013830, Chr17G013270, Chr19G001900, Chr20G006510, Chr21G012030, Chr27G015300, Chr29G006160
Poaceae	Thinopyrum elongatum	3	Tel3E01G072000, Tel5E01G327300, Tel6E01G319700
Poaceae	Triticum dicoccoides	6	gene_TRIDC2BG078030, gene_TRIDC5AG031560 ... gene_TRIDC5BG033260, gene_TRIDC6AG021870, gene_TRIDC6BG027640, gene_TRIDC7BG060600
Poaceae	Triticum aestivum	11	TraesCS3A02G044200.1.cds1, TraesCS3D02G036600.1 ... TraesCS5A02G189700.1.cds1, TraesCS5B02G193500.1.cds1, TraesCS5D02G201200.1.cds1, TraesCS6A02G156200.1.cds1, TraesCS6B02G184400.1.cds1, TraesCS6D02G146200.1.cds1, TraesCS7A02G478700.1.cds1, TraesCS7B02G381400.1.cds1, TraesCS7D02G466100.1.cds1
Poaceae	Zea mays	9	Zm00001eb084880_P001, Zm00001eb098700_P001 ... Zm00001eb178900_P001, Zm00001eb233250_P001, Zm00001eb274360_P001, Zm00001eb311250_P001, Zm00001eb327890_P001, Zm00001eb389870_P001, Zm00001eb392380_P001
Poaceae	Zoysia japonica	12	nbis-gene-11999, nbis-gene-16904, nbis-gene-19915 ... nbis-gene-29855, nbis-gene-30989, nbis-gene-327, nbis-gene-33641, nbis-gene-40519, nbis-gene-45028, nbis-gene-52172, nbis-gene-55130, nbis-gene-9800
Poaceae	Zoysia macrostachya	10	Zma_g1095, Zma_g12265, Zma_g15023, Zma_g22966, Zma_g24050 ... Zma_g30965, Zma_g32498, Zma_g33225, Zma_g3524, Zma_g6890
Portulacaceae	Portulaca oleracea	7	evm.TU.LG01.239, evm.TU.LG05.653, evm.TU.LG06.672 ... evm.TU.LG11.111, evm.TU.LG18.414, evm.TU.LG25.666, evm.TU.LG26.622
Posidoniaceae	Posidonia oceanica	3	gene.Posoc02g29360, gene.Posoc04g15220, gene.Posoc10g08670
Rhizophoraceae	Bruguiera sexangula	8	evm.TU.Scaffold_10_RagTag.1015, evm.TU.Scaffold_8_RagTag.282 ... evm.TU.Scaffold_3_RagTag.1053, evm.TU.Scaffold_4_RagTag.1512, evm.TU.Scaffold_6_RagTag.1648, evm.TU.Scaffold_7_RagTag.1006, evm.TU.Scaffold_7_RagTag.1513, evm.TU.Scaffold_8_RagTag.724
Rhizophoraceae	Carallia pectinifolia	9	nbisL1-mrna-10012, nbisL1-mrna-13476, nbisL1-mrna-17521 ... nbisL1-mrna-18840, nbisL1-mrna-19974, nbisL1-mrna-20323, nbisL1-mrna-26232, nbisL1-mrna-945, nbisL1-mrna-9517
Rhizophoraceae	Ceriops tagal	8	nbisL1-mrna-1023, nbisL1-mrna-13585, nbisL1-mrna-14975 ... nbisL1-mrna-158, nbisL1-mrna-16161, nbisL1-mrna-16497, nbisL1-mrna-17598, nbisL1-mrna-1977
Rhizophoraceae	Ceriops zippeliana	8	nbisL1-mrna-12118, nbisL1-mrna-13447, nbisL1-mrna-17905 ... nbisL1-mrna-18271, nbisL1-mrna-2322, nbisL1-mrna-4342, nbisL1-mrna-6831, nbisL1-mrna-9249
Rhizophoraceae	Kandelia candel	8	add.evm.TU.utg000002l.298, add.evm.TU.utg000002l.65 ... add.evm.TU.utg000004l.98, add.evm.TU.utg000008l.321, add.evm.TU.utg000011l.396, add.evm.TU.utg000018l.204, add.evm.TU.utg000018l.323, add.evm.TU.utg000019l.267
Rhizophoraceae	Kandelia obovata	6	Maker00000310, Maker00001886, Maker00003127, Maker00003706 ... Maker00008110, Maker00010528
Rhizophoraceae	Rhizophora apiculata	8	nbisL1-mrna-15113, nbisL1-mrna-17583, nbisL1-mrna-17893 ... nbisL1-mrna-17994, nbisL1-mrna-18219, nbisL1-mrna-19200, nbisL1-mrna-20026, nbisL1-mrna-22773
Rhizophoraceae	Rhizophora mangle	7	nbisL1-mrna-11327, nbisL1-mrna-12199, nbisL1-mrna-1747 ... nbisL1-mrna-20332, nbisL1-mrna-4425, nbisL1-mrna-7690, nbisL1-mrna-9936
Salicaceae	Populus euphratica	10	populus_peu02993, populus_peu10447, populus_peu10531 ... populus_peu13782, populus_peu14624, populus_peu22941, populus_peu26432, populus_peu32292, populus_peu33869, populus_peu37340
Solanaceae	Lycium barbarum	5	gene-LOC132601814, gene-LOC132614646, gene-LOC132618583 ... gene-LOC132624429, gene-LOC132627493
Solanaceae	Solanum chilense	5	SOLCI001049900, SOLCI001788000, SOLCI002873100 ... SOLCI004375100, SOLCI005066000
Solanaceae	Solanum pennellii	5	gene-LOC107006034, gene-LOC107009869, gene-LOC107016098 ... gene-LOC107016346, gene-LOC107025397
Tamaricaceae	Reaumuria soongarica	3	STRG.16610_chr06_+, STRG.22171_chr09_-, STRG.6002_chr02_-
Tamaricaceae	Tamarix chinensis	3	TC03G2772, TC07G1973, TC09G0014
Zosteraceae	Zostera marina	3	Zosma03g22450.v3.1, Zosma03g33850.v3.1, Zosma05g20080.v3.1