Basic Information
Locus ID:
AgUnG00077
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Short Name:
XLG2
Description:
Extra-large guanine nucleotide-binding protein 1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ctg1452 | 83177 | 88519 | - | AgUnG00077 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.55 | 45,876.21 Da | 32.75 | 82.76 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | G3DSA:3.40.50.300 | - | 242 | 380 | 2.3E-11 | IPR027417 |
KEGG Pathway
Pathway:
ko04015 (Rap1 signaling pathway)
map04015 (Rap1 signaling pathway)
ko04022 (cGMP-PKG signaling pathway)
map04022 (cGMP-PKG signaling pathway)
ko04024 (cAMP signaling pathway)
map04024 (cAMP signaling pathway)
ko04062 (Chemokine signaling pathway)
map04062 (Chemokine signaling pathway)
ko04071 (Sphingolipid signaling pathway)
map04071 (Sphingolipid signaling pathway)
ko04371 (Apelin signaling pathway)
map04371 (Apelin signaling pathway)
map04611 (Platelet activation)
map04670 (Leukocyte transendothelial migration)
ko04916 (Melanogenesis)
map04916 (Melanogenesis)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G34390.2 | - | 0 |
| RefSeq | XP_017223868.1 | PREDICTED: extra-large guanine nucleotide-binding protein 1-like [Daucus carota subsp. sativus] | 0 |
| O80462 | Extra-large guanine nucleotide-binding protein 1 OS=Arabidopsis thaliana OX=3702 GN=XLG1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A6L5BB05 | FBD domain-containing protein OS=Apium graveolens OX=4045 GN=AG4045_012293 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 0.247638 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 0 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 0.114588 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 0.401305 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 0.091244 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 0.059391 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 0.347705 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0.730341 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 0 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 0 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 0 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 0.352154 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 0.782815 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 0.729792 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 0.241061 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 0 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0.203795 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0.692273 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 0.134684 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 2.675469 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 0.261653 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 0 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 6 | jg26233, jg28719, jg28720, jg28724, jg30277, jg40092 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_16902, gene_21599 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah010334, Ah026672 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_6g138440, BVRB_9g218240 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg12509, Sbi_jg45804, Sbi_jg51541, Sbi_jg5808 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg13561, Seu_jg20166 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00013493, GOSA_00022394 |
| Amaranthaceae | Suaeda glauca | 5 | Sgl00025, Sgl05094, Sgl34187, Sgl39484, Sgl39533 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000000492, gene:ENSEOMG00000002698 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.6AG0018580, CQ.Regalona.r1.6BG0019680 ... |
| Anacardiaceae | Pistacia vera | 5 | pistato.v30113590, pistato.v30113600, pistato.v30207110 ... |
| Apiaceae | Apium graveolens | 5 | Ag10G02270, Ag3G00207, Ag6G02593, Ag9G00129, AgUnG00077 |
| Arecaceae | Cocos nucifera | 2 | COCNU_06G017810, COCNU_14G010180 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103709166, gene-LOC103723888 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_03.2304.V1.1, AsparagusV1_05.3397.V1.1 ... |
| Asteraceae | Flaveria trinervia | 2 | Ftri14G14598, Ftri17G19545 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT2G23460.1, AT4G34390.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10000039m.g.v1.0, Thhalv10024380m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp4g02460.v2.2, Sp7g32180.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB01g020300.2N, BniB02g086980.2N, BniB03g020630.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq08G1664, Ceq09G0026 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl08G1704, Cgl09G0031 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno01g15050, gene.Cymno11g03530 |
| Hydrocharitaceae | Thalassia testudinum | 3 | gene.Thate03g05340, gene.Thate06g13380, gene.Thate06g16410 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-10534, nbisL1-mrna-7068 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG02.2228, evm.TU.LG08.72 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00029359, Pov_00035537 |
| Plumbaginaceae | Limonium bicolor | 4 | Lb1G05965, Lb1G05969, Lb3G17191, Lb3G18590 |
| Poaceae | Echinochloa crus-galli | 3 | AH05.3920, BH05.4000, CH05.4200 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0396300, gene-QOZ80_5BG0444560 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0437540.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_000482 |
| Poaceae | Oryza coarctata | 2 | Oco23G009580, Oco24G009310 |
| Poaceae | Oryza sativa | 1 | LOC_Os12g40190.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_08G127700 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0704170 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr04G018270, Chr06G018900, Chr19G008290, Chr27G008330 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G134400 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG009970, gene_TRIDC5BG011620 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G064400.1, TraesCS5B02G068300.2 ... |
| Poaceae | Zea mays | 1 | Zm00001eb030570_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-30473 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g25269, Zma_g26058 |
| Portulacaceae | Portulaca oleracea | 5 | evm.TU.LG02.410, evm.TU.LG05.246, evm.TU.LG08.1866 ... |
| Posidoniaceae | Posidonia oceanica | 3 | gene.Posoc03g28150, gene.Posoc04g06780, gene.Posoc06g16910 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_1_RagTag.2148, evm.TU.Scaffold_3_RagTag.307 ... |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-17195, nbisL1-mrna-549, nbisL1-mrna-5956 |
| Rhizophoraceae | Ceriops tagal | 4 | nbisL1-mrna-11255, nbisL1-mrna-14543, nbisL1-mrna-16927 ... |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-11853, nbisL1-mrna-3389, nbisL1-mrna-6032 |
| Rhizophoraceae | Kandelia candel | 4 | evm.TU.utg000011l.1182, evm.TU.utg000016l.178 ... |
| Rhizophoraceae | Kandelia obovata | 4 | Maker00008370, Maker00012723, Maker00016257, Maker00017354 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-15547, nbisL1-mrna-4740, nbisL1-mrna-6464 |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-14077, nbisL1-mrna-2275, nbisL1-mrna-3159 |
| Salicaceae | Populus euphratica | 5 | populus_peu08944, populus_peu14269, populus_peu23478 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132599116, gene-LOC132623225 |
| Solanaceae | Solanum chilense | 2 | SOLCI002767500, SOLCI003385200 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107010039, gene-LOC107011325 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.11377_chr02_-, gene_3820 |
| Tamaricaceae | Tamarix chinensis | 2 | TC04G2149, TC10G0537 |
| Zosteraceae | Zostera marina | 1 | Zosma06g06910.v3.1 |