Basic Information
Locus ID:
AgUnG00066
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ctg1432 | 13066 | 13602 | + | AgUnG00066 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.60 | 20,287.17 Da | 80.90 | 74.94 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 82 | 125 | 5.2679E-16 | - |
| Pfam | PF13639 | Ring finger domain | 82 | 125 | 1.3E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 69 | 129 | 7.07E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 48 | 130 | 1.1E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 83 | 124 | 3.0E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 83 | 125 | 12.40076 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 39 | 55 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 31 | 55 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G27940.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_017234408.1 | PREDICTED: RING-H2 finger protein ATL57-like [Daucus carota subsp. sativus] | 0 |
| Q9SJJ7 | RING-H2 finger protein ATL57 OS=Arabidopsis thaliana OX=3702 GN=ATL57 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6L5BBM8 | RING-type domain-containing protein OS=Apium graveolens OX=4045 GN=AG4045_029840 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 49.277061 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 36.345249 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 44.882717 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 36.190166 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 43.020061 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 64.029686 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 52.352737 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 69.66983 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 0.125572 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 0.166954 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 0.323825 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 0.34911 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 0.169997 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 0.225423 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 0.422942 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 0.490228 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 0.06885 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 0.345845 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 0.532548 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 1.964686 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 1.989115 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 3.630266 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 1.158955 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 0.6292 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 0.783318 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 0.141758 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.221294 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.316126 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.098099 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0.066913 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 0.633954 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0.061968 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.470125 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 0.346713 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0.169888 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0.126139 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0.550276 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 2.579561 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 3.925264 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 2.039113 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 0.81744 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 0.282124 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 0.335571 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg12946, jg16510, jg35948, jg8202 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah011684 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg11972, Sbi_jg46905 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg21195 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00009535 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl80387, Sgl82848 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000020022 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.9BG0012490 |
| Apiaceae | Apium graveolens | 1 | AgUnG00066 |
| Arecaceae | Cocos nucifera | 1 | COCNU_09G007970 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC108511234 |
| Asteraceae | Flaveria trinervia | 1 | Ftri16G20202 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G27940.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10017824m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g10760.v2.2 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G1688 |
| Casuarinaceae | Casuarina glauca | 3 | Cgl05G1683, Cgl05G1686, Cgl05G1687 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno03g06060 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate08g01750, gene.Thate08g01760 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-480 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00015906, Pov_00026478 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG06.1041, evm.TU.LG08.1594, evm.TU.LG11.480 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g13740 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_14_RagTag.834 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-16589 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-5506 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-17158 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000025l.20 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00012333 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-23172 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-23798 |
| Salicaceae | Populus euphratica | 2 | populus_peu02506, populus_peu37716 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132600491 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107003390 |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G1906 |
| Zosteraceae | Zostera marina | 1 | Zosma04g23090.v3.1 |