halophFGD

Basic Information

Locus ID: AgUnG00047

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Short Name: UBP12

Description: Belongs to the peptidase C19 family

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
ctg1319	64557	83860	-	AgUnG00047

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.42	124,861.72 Da	41.00	79.83	-0.63

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd00121	MATH	50	173	5.04965E-37	IPR002083
CDD	cd02659	peptidase_C19C	175	474	1.05726E-139	-
Pfam	PF14533	Ubiquitin-specific protease C-terminal	835	1053	9.0E-52	IPR029346
Pfam	PF00443	Ubiquitin carboxyl-terminal hydrolase	185	469	7.1E-33	IPR001394
Pfam	PF12436	ICP0-binding domain of Ubiquitin-specific protease 7	573	825	6.7E-77	IPR024729
Pfam	PF00917	MATH domain	56	173	8.3E-21	IPR002083
SUPERFAMILY	SSF54001	Cysteine proteinases	180	500	2.35E-78	IPR038765
SUPERFAMILY	SSF49599	TRAF domain-like	49	176	4.74E-40	-
Gene3D	G3DSA:3.10.20.90	-	751	848	1.0E-26	-
Gene3D	G3DSA:2.60.210.10	Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A	46	185	1.6E-47	IPR008974
Gene3D	G3DSA:3.90.70.10	Cysteine proteinases	275	473	5.3E-42	-
Gene3D	G3DSA:3.10.20.90	-	633	750	1.1E-44	-
SMART	SM00061	math_3	50	154	2.4E-20	IPR002083
ProSiteProfiles	PS50144	MATH/TRAF domain profile.	48	173	37.011116	IPR002083
ProSiteProfiles	PS50235	Ubiquitin specific protease (USP) domain profile.	157	472	30.70462	IPR028889
ProSitePatterns	PS00973	Ubiquitin specific protease (USP) domain signature 2.	388	405	-	IPR018200
Coils	Coil	Coil	1059	1064	-	-
Coils	Coil	Coil	488	508	-	-

Gene Ontology

Biological Process:

GO:0006511 (ubiquitin-dependent protein catabolic process) GO:0016579 (protein deubiquitination)

Molecular Function:

GO:0004843 (cysteine-type deubiquitinase activity) GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K11838 (ubiquitin carboxyl-terminal hydrolase 7 [EC:3.4.19.12])

Pathway:

ko04068 (FoxO signaling pathway) map04068 (FoxO signaling pathway)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G06600.1	ubiquitin-specific protease 12. Encodes a ubiquitin-specific protease.
RefSeq	XP_017252644.1	PREDICTED: ubiquitin carboxyl-terminal hydrolase 12-like isoform X1 [Daucus carota subsp. sativus]
Swiss-Prot	Q9FPT1	Ubiquitin C-terminal hydrolase 12 OS=Arabidopsis thaliana OX=3702 GN=UBP12 PE=1 SV=2
TrEMBL	A0A6L5BBP7	ubiquitinyl hydrolase 1 OS=Apium graveolens OX=4045 GN=AG4045_011463 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	72.915031	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	55.024681	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	59.462303	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	61.267323	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	64.093384	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	65.112892	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	63.37254	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	63.909958	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	60.608795	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	58.930164	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	64.990807	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	62.095879	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	58.84552	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	48.784504	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	23.332556	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	29.208773	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	22.17075	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	51.132313	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	30.86574	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	43.806992	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	52.636547	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	29.623278	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	37.449974	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	29.334702	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	32.973625	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	55.240128	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	40.882431	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	43.65234	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	51.970215	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	6.593171		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	9.566541		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	6.969704		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	29.319056		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	15.6084		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	30.319942		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	12.637115		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	4.370953		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	7.985558		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	34.888783	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	23.070238	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	17.038269	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	35.335571	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	52.311405	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	84.284515	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	72.771263	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	28.570421	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	69.123611	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	24.377007	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	23.679617	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	18.714775	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	4	jg14380, jg15189, jg16400, jg3692
Aizoaceae	Mesembryanthemum crystallinum	2	gene_2338, gene_5748
Amaranthaceae	Atriplex hortensis	2	Ah002944, Ah027763
Amaranthaceae	Beta vulgaris	2	BVRB_5g109330, BVRB_7g171470
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg1476, Sbi_jg15855, Sbi_jg35076, Sbi_jg56646
Amaranthaceae	Salicornia europaea	2	Seu_jg13841, Seu_jg3266
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00003436, GOSA_00028072
Amaranthaceae	Suaeda glauca	4	Sgl52695, Sgl57982, Sgl72692, Sgl76231
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000007647, gene:ENSEOMG00000007785 ... gene:ENSEOMG00000022426, gene:ENSEOMG00000025171, gene:ENSEOMG00000035880, gene:ENSEOMG00000041819
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.5AG0011880, CQ.Regalona.r1.5BG0012330 ... CQ.Regalona.r1.7AG0005100, CQ.Regalona.r1.9BG0000700
Anacardiaceae	Pistacia vera	4	pistato.v30055600, pistato.v30169130, pistato.v30277290 ... pistato.v30277770
Apiaceae	Apium graveolens	4	Ag10G02119, Ag10G02120, Ag3G00705, AgUnG00047
Arecaceae	Cocos nucifera	3	COCNU_03G000270, COCNU_06G018260, COCNU_08G000240
Arecaceae	Phoenix dactylifera	3	gene-LOC103696442, gene-LOC103707271, gene-LOC103720599
Asparagaceae	Asparagus officinalis	4	AsparagusV1_01.3391.V1.1, AsparagusV1_03.441.V1.1 ... AsparagusV1_05.1674.V1.1, AsparagusV1_07.3390.V1.1
Asteraceae	Flaveria trinervia	7	Ftri11G06966, Ftri17G33792, Ftri18G06455, Ftri6G28641 ... Ftri6G32788, Ftri8G00768, Ftri8G14509
Brassicaceae	Arabidopsis thaliana	2	AT3G11910.1, AT5G06600.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10012503m.g.v1.0, Thhalv10019920m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp3g10120.v2.2, Sp6g36260.v2.2
Brassicaceae	Brassica nigra	5	BniB01g053070.2N, BniB02g054180.2N, BniB05g028730.2N ... BniB07g025650.2N, BniB08g002650.2N
Casuarinaceae	Casuarina equisetifolia	3	Ceq04G1225, Ceq05G1526, Ceq08G1613
Casuarinaceae	Casuarina glauca	3	Cgl04G1385, Cgl05G1524, Cgl08G1653
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno01g00260, gene.Cymno06g14030
Dunaliellaceae	Dunaliella salina	1	Dusal.0097s00017.v1.0
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate03g04470, gene.Thate08g10280
Malvaceae	Hibiscus hamabo Siebold & Zucc.	5	nbisL1-mrna-1230, nbisL1-mrna-4081, nbisL1-mrna-441 ... nbisL1-mrna-6467, nbisL1-mrna-8507
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG01.1794, evm.TU.LG09.517
Plantaginaceae	Plantago ovata	4	Pov_00003610, Pov_00015727, Pov_00026564, Pov_00040140
Plumbaginaceae	Limonium bicolor	4	Lb3G19271, Lb3G19275, Lb3G20266, Lb4G25833
Poaceae	Echinochloa crus-galli	12	AH02.3420, AH03.307, AH04.1721, AH05.3493, BH02.3548 ... BH03.389, BH04.1706, BH05.3500, CH02.3076, CH03.456, CH04.1949, CH05.3642
Poaceae	Eleusine coracana subsp. coracana	8	gene-QOZ80_1AG0034930, gene-QOZ80_1BG0084980 ... gene-QOZ80_5AG0390540, gene-QOZ80_5BG0440250, gene-QOZ80_7AG0556660, gene-QOZ80_7BG0587560, gene-QOZ80_9AG0684800, gene-QOZ80_9BG0710870
Poaceae	Hordeum vulgare	4	HORVU.MOREX.r3.2HG0151540.1, HORVU.MOREX.r3.3HG0292280.1 ... HORVU.MOREX.r3.4HG0365190.1, HORVU.MOREX.r3.5HG0451020.1
Poaceae	Lolium multiflorum	5	gene-QYE76_007548, gene-QYE76_008182, gene-QYE76_042616 ... gene-QYE76_059489, gene-QYE76_066479
Poaceae	Oryza coarctata	6	Oco01G021420, Oco02G022160, Oco13G001950, Oco14G002020 ... Oco23G006640, Oco24G006310
Poaceae	Oryza sativa	4	LOC_Os01g56490.1, LOC_Os07g06950.1, LOC_Os11g36470.1 ... LOC_Os12g30540.1
Poaceae	Paspalum vaginatum	3	gene-BS78_02G042300, gene-BS78_03G290900 ... gene-BS78_08G072800
Poaceae	Puccinellia tenuiflora	6	Pt_Chr0103145, Pt_Chr0300142, Pt_Chr0303579, Pt_Chr0303603 ... Pt_Chr0405668, Pt_Chr0703499
Poaceae	Sporobolus alterniflorus	17	Chr03G017240, Chr04G015370, Chr05G025090, Chr06G015980 ... Chr07G015920, Chr08G017210, Chr0G002380, Chr0G003680, Chr0G004780, Chr16G005540, Chr17G004920, Chr19G010530, Chr19G017620, Chr24G000960, Chr27G005610, Chr28G001310, Chr31G007000
Poaceae	Thinopyrum elongatum	4	Tel2E01G452500, Tel3E01G502300, Tel4E01G264900 ... Tel5E01G206100
Poaceae	Triticum dicoccoides	8	gene_TRIDC2AG034050, gene_TRIDC2BG039010 ... gene_TRIDC3AG045230, gene_TRIDC3BG051190, gene_TRIDC4AG025240, gene_TRIDC4BG028570, gene_TRIDC5AG016510, gene_TRIDC5BG019640
Poaceae	Triticum aestivum	11	TraesCS2A02G246800.3, TraesCS2B02G263500.4 ... TraesCS2D02G249100.1, TraesCS3A02G295900.7, TraesCS3B02G341000.1, TraesCS3D02G307100.1, TraesCS4A02G163000.1, TraesCS4D02G165800.1, TraesCS5A02G105900.1, TraesCS5B02G111000.7, TraesCS5D02G123300.4
Poaceae	Zea mays	6	Zm00001eb117210_P003, Zm00001eb132880_P002 ... Zm00001eb151920_P003, Zm00001eb200320_P001, Zm00001eb300680_P003, Zm00001eb408670_P001
Poaceae	Zoysia japonica	3	nbis-gene-26919, nbis-gene-31201, nbis-gene-35733
Poaceae	Zoysia macrostachya	6	Zma_g11243, Zma_g18097, Zma_g25067, Zma_g25821, Zma_g4768 ... Zma_g6025
Portulacaceae	Portulaca oleracea	4	evm.TU.LG18.267, evm.TU.LG19.1098, evm.TU.LG24.1099 ... evm.TU.LG26.808
Posidoniaceae	Posidonia oceanica	2	gene.Posoc03g00540, gene.Posoc07g09260
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_1_RagTag.1084, evm.TU.Scaffold_1_RagTag.1292 ... evm.TU.Scaffold_2_RagTag.1223
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-3880, nbisL1-mrna-6304, nbisL1-mrna-6525
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-12487, nbisL1-mrna-17286, nbisL1-mrna-18129
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-18774, nbisL1-mrna-21124, nbisL1-mrna-4147
Rhizophoraceae	Kandelia candel	3	evm.TU.utg000009l.487, evm.TU.utg000016l.371 ... evm.TU.utg000016l.860
Rhizophoraceae	Kandelia obovata	3	Maker00005311, Maker00016405, Maker00017060
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-11044, nbisL1-mrna-12390, nbisL1-mrna-7542
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-13292, nbisL1-mrna-13474, nbisL1-mrna-5502
Salicaceae	Populus euphratica	2	populus_peu06023, populus_peu26016
Solanaceae	Lycium barbarum	5	gene-LOC132600678, gene-LOC132603747, gene-LOC132607257 ... gene-LOC132615832, gene-LOC132640124
Solanaceae	Solanum chilense	4	SOLCI000938900, SOLCI001502600, SOLCI002727600 ... SOLCI003293800
Solanaceae	Solanum pennellii	5	gene-LOC107002269, gene-LOC107004680, gene-LOC107004751 ... gene-LOC107020448, gene-LOC107022576
Tamaricaceae	Reaumuria soongarica	4	gene_13242, gene_16085, gene_3020, gene_7265
Tamaricaceae	Tamarix chinensis	4	TC01G1143, TC05G3022, TC09G0679, TC11G1253
Zosteraceae	Zostera marina	4	Zosma02g00170.v3.1, Zosma04g06340.v3.1, Zosma06g30480.v3.1 ... Zosma06g30490.v3.1