halophFGD

Basic Information

Locus ID: AgUnG00040

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Protein NRT1 PTR FAMILY 4.3-like

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
ctg1271	37350	40500	+	AgUnG00040

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.98	61,129.62 Da	44.87	104.16	0.43

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd17416	MFS_NPF1_2	25	546	2.8446E-175	-
Pfam	PF00854	POT family	89	511	1.8E-70	IPR000109
SUPERFAMILY	SSF103473	MFS general substrate transporter	36	543	6.54E-21	IPR036259
Gene3D	G3DSA:1.20.1250.20	MFS general substrate transporter like domains	6	550	1.2E-146	IPR036259

Gene Ontology

Biological Process:

GO:0055085 (transmembrane transport)

Molecular Function:

GO:0022857 (transmembrane transporter activity)

Cellular Component:

GO:0016020 (membrane)

KEGG Pathway

KO Term:

K14638 (solute carrier family 15 (peptide/histidine transporter), member 3/4)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G52190.1	Major facilitator superfamily protein.
RefSeq	XP_017239091.1	PREDICTED: protein NRT1/ PTR FAMILY 1.2-like [Daucus carota subsp. sativus]
Swiss-Prot	Q9M817	Protein NRT1/ PTR FAMILY 1.2 OS=Arabidopsis thaliana OX=3702 GN=NPF1.2 PE=1 SV=1
TrEMBL	A0A6L5BB38	Protein NRT1/PTR FAMILY 1.2-like OS=Apium graveolens OX=4045 GN=AG4045_025683 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	1.1237	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	1.62579	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	1.664489	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	1.44816	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	2.181054	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	0.636939	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	0.346705	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	0	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	23.918329	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	19.704155	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	27.115749	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	21.485214	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	19.504444	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	19.648401	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	3.862308	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	5.350649	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	14.664918	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	23.477308	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	12.731589	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	14.204344	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	41.579781	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	38.984425	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	13.788036	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	27.253408	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	29.849012	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	23.456488	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	12.57545	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	20.457861	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	17.825935	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	4.934795		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	5.342109		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	4.088119		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	5.933173		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	8.79224		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	6.425466		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	3.911354		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	3.821222		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	3.665693		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	4.374375	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	6.555312	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	6.554467	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	0.793522	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	1.1093	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	2.449074	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	2.314121	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	0.94855	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	7.88398	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	9.037493	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	15.393863	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	17.112392	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	4	jg18135, jg36725, jg4534, jg4535
Aizoaceae	Mesembryanthemum crystallinum	2	gene_13236, gene_26122
Amaranthaceae	Atriplex hortensis	9	Ah006097, Ah010871, Ah010872, Ah017560, Ah022731, Ah022732 ... Ah034956, Ah034957, Ah034958
Amaranthaceae	Beta vulgaris	5	BVRB_2g032110, BVRB_2g032120, BVRB_2g032160, BVRB_2g032180 ... BVRB_9g221330
Amaranthaceae	Salicornia bigelovii	12	Sbi_jg11376, Sbi_jg20967, Sbi_jg20970, Sbi_jg20973 ... Sbi_jg20974, Sbi_jg22806, Sbi_jg22808, Sbi_jg22812, Sbi_jg22814, Sbi_jg40103, Sbi_jg46327, Sbi_jg50010
Amaranthaceae	Salicornia europaea	6	Seu_jg16678, Seu_jg16679, Seu_jg16681, Seu_jg16686 ... Seu_jg1671, Seu_jg20656
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00005322, GOSA_00011297, GOSA_00018211
Amaranthaceae	Suaeda glauca	6	Sgl46280, Sgl50992, Sgl55806, Sgl61013, Sgl62244, Sgl66791
Amaranthaceae	Chenopodium album	15	gene:ENSEOMG00000008416, gene:ENSEOMG00000012328 ... gene:ENSEOMG00000014931, gene:ENSEOMG00000015224, gene:ENSEOMG00000017459, gene:ENSEOMG00000018836, gene:ENSEOMG00000019804, gene:ENSEOMG00000030175, gene:ENSEOMG00000035709, gene:ENSEOMG00000040000, gene:ENSEOMG00000045907, gene:ENSEOMG00000047847, gene:ENSEOMG00000049732, gene:ENSEOMG00000050012, gene:ENSEOMG00000051427
Amaranthaceae	Chenopodium quinoa	9	CQ.Regalona.r1.1AG0001230, CQ.Regalona.r1.2AG0015780 ... CQ.Regalona.r1.2BG0017780, CQ.Regalona.r1.2BG0027300, CQ.Regalona.r1.4AG0010480, CQ.Regalona.r1.7BG0011590, CQ.Regalona.r1.8AG0002010, CQ.Regalona.r1.8BG0001980, CQ.Regalona.r1.9AG0013080
Anacardiaceae	Pistacia vera	4	pistato.v30124140, pistato.v30124950, pistato.v30253650 ... pistato.v30256770
Apiaceae	Apium graveolens	17	Ag1G01206, Ag4G00151, Ag4G00152, Ag5G00860, Ag5G01886 ... Ag6G01302, Ag6G01303, Ag7G00307, Ag7G00308, Ag7G00309, Ag7G00310, Ag8G00224, Ag9G01131, Ag9G01133, Ag9G01134, Ag9G01135, AgUnG00040
Arecaceae	Cocos nucifera	3	COCNU_06G005370, COCNU_14G003650, scaffold023260G000010
Arecaceae	Phoenix dactylifera	1	gene-LOC103709533
Asparagaceae	Asparagus officinalis	2	AsparagusV1_05.1916.V1.1, AsparagusV1_05.1917.V1.1
Asteraceae	Flaveria trinervia	7	Ftri10G16436, Ftri12G12696, Ftri12G24650, Ftri15G04492 ... Ftri18G20904, Ftri1G27918, FtriNA00819
Brassicaceae	Arabidopsis thaliana	3	AT1G52190.1, AT3G16180.1, AT5G11570.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10011325m.g.v1.0, Thhalv10020365m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp1g38740.v2.2, Sp3g14550.v2.2
Brassicaceae	Brassica nigra	3	BniB01g048730.2N, BniB04g057670.2N, BniB07g053550.2N
Casuarinaceae	Casuarina equisetifolia	3	Ceq04G2097, Ceq05G0311, Ceq06G1515
Casuarinaceae	Casuarina glauca	4	Cgl04G2290, Cgl06G1570, Cgl06G1571, Cgl06G1572
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-765
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG01.325, evm.TU.LG07.1110
Plantaginaceae	Plantago ovata	5	Pov_00003862, Pov_00013633, Pov_00013669, Pov_00022690 ... Pov_00025691
Plumbaginaceae	Limonium bicolor	2	Lb2G08494, Lb2G15472
Poaceae	Echinochloa crus-galli	6	AH02.3343, AH02.3344, BH02.3624, BH02.3625, CH02.3161 ... CH02.3164
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_1AG0034090, gene-QOZ80_1AG0034100 ... gene-QOZ80_1BG0084150, gene-QOZ80_1BG0084160
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.3HG0290590.1, HORVU.MOREX.r3.3HG0290630.1
Poaceae	Lolium multiflorum	2	gene-QYE76_055099, gene-QYE76_055101
Poaceae	Oryza coarctata	3	Oco01G020880, Oco02G021440, Oco02G021450
Poaceae	Oryza sativa	2	LOC_Os01g55600.1, LOC_Os01g55610.1
Poaceae	Paspalum vaginatum	2	gene-BS78_03G284300, gene-BS78_03G284400
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0500372, Pt_Chr0602705
Poaceae	Sporobolus alterniflorus	12	Chr01G010090, Chr02G008930, Chr02G008940, Chr02G008950 ... Chr02G008960, Chr03G016770, Chr05G024520, Chr05G024530, Chr05G024540, Chr05G024550, Chr05G024560, Chr12G026780
Poaceae	Thinopyrum elongatum	2	Tel3E01G491700, Tel3E01G492000
Poaceae	Triticum dicoccoides	5	gene_TRIDC3AG044030, gene_TRIDC3AG044040 ... gene_TRIDC3AG044050, gene_TRIDC3BG050000, gene_TRIDC3BG050010
Poaceae	Triticum aestivum	6	TraesCS3A02G304400.1, TraesCS3A02G304500.1 ... TraesCS3B02G332000.1, TraesCS3B02G332100.1, TraesCS3D02G297400.1, TraesCS3D02G297600.1
Poaceae	Zea mays	2	Zm00001eb152390_P001, Zm00001eb152400_P001
Poaceae	Zoysia japonica	3	nbis-gene-31142, nbis-gene-31143, nbis-gene-48769
Poaceae	Zoysia macrostachya	2	Zma_g11205, Zma_g11206
Portulacaceae	Portulaca oleracea	11	evm.TU.LG07.1675, evm.TU.LG07.670, evm.TU.LG07.671 ... evm.TU.LG07.674, evm.TU.LG07.675, evm.TU.LG08.1649, evm.TU.LG15.1542, evm.TU.LG15.267, evm.TU.LG15.268, evm.TU.LG15.271, evm.TU.LG22.541
Rhizophoraceae	Bruguiera sexangula	1	evm.TU.Scaffold_10_RagTag.436
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-13100, nbisL1-mrna-13713, nbisL1-mrna-25644
Rhizophoraceae	Ceriops tagal	1	nbisL1-mrna-6586
Rhizophoraceae	Ceriops zippeliana	1	nbisL1-mrna-16829
Rhizophoraceae	Kandelia candel	1	evm.TU.utg000033l.293
Rhizophoraceae	Kandelia obovata	1	Maker00014911
Rhizophoraceae	Rhizophora apiculata	1	nbisL1-mrna-18357
Rhizophoraceae	Rhizophora mangle	1	nbisL1-mrna-8274
Salicaceae	Populus euphratica	13	populus_peu02673, populus_peu02720, populus_peu04894 ... populus_peu04895, populus_peu04896, populus_peu04897, populus_peu04898, populus_peu04899, populus_peu04900, populus_peu04902, populus_peu04903, populus_peu12761, populus_peu30153
Solanaceae	Lycium barbarum	13	gene-LOC132601903, gene-LOC132601904, gene-LOC132603689 ... gene-LOC132604207, gene-LOC132604208, gene-LOC132604210, gene-LOC132604211, gene-LOC132633379, gene-LOC132636803, gene-LOC132641398, gene-LOC132641399, gene-LOC132642690, gene-LOC132642691
Solanaceae	Solanum chilense	15	SOLCI000568900, SOLCI001760800, SOLCI002063400 ... SOLCI004066000, SOLCI004066100, SOLCI005619200, SOLCI007108800, SOLCI007241300, SOLCI007241400, SOLCI007241700, SOLCI007242000, SOLCI007242100, SOLCI007242200, SOLCI007242300, SOLCI007307200
Solanaceae	Solanum pennellii	18	gene-LOC107005491, gene-LOC107005915, gene-LOC107012272 ... gene-LOC107015096, gene-LOC107015114, gene-LOC107015115, gene-LOC107018238, gene-LOC107018446, gene-LOC107018741, gene-LOC107019137, gene-LOC107019153, gene-LOC107019160, gene-LOC107020017, gene-LOC107020329, gene-LOC107020330, gene-LOC107020331, gene-LOC107027059, gene-LOC114073829
Tamaricaceae	Reaumuria soongarica	2	STRG.19044_chr07_+, gene_3138
Tamaricaceae	Tamarix chinensis	1	TC08G1991