Basic Information
Locus ID:
AgUnG00032
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Ring finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ctg118 | 57558 | 64127 | + | AgUnG00032 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.77 | 46,496.41 Da | 62.09 | 50.52 | -0.83 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF57850 | RING/U-box | 247 | 317 | 3.45E-8 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 236 | 314 | 5.7E-9 | IPR013083 |
| SMART | SM00184 | ring_2 | 253 | 311 | 0.0035 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 253 | 312 | 10.276328 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 25 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 382 | 423 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 396 | 423 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 304 | 340 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 55 | 74 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G14180.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_017221658.1 | PREDICTED: uncharacterized protein LOC108198414, partial [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A6L5BFR6 | RING-type domain-containing protein (Fragment) OS=Apium graveolens OX=4045 GN=AG4045_000770 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 19.936903 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 15.080308 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 21.568424 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 19.34248 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 20.046656 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 29.116053 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 24.583473 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 32.079529 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 36.381126 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 35.503296 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 37.104958 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 32.344734 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 30.556103 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 27.676249 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 13.542646 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 12.032421 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 16.005579 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 20.435637 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 21.658932 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 24.261194 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 19.875322 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 44.618969 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 65.381874 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 32.727432 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 36.827709 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 24.967762 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 35.209259 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 20.499182 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 28.392477 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 13.45632 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 14.629832 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 14.769797 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 29.400877 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 19.459644 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 24.01836 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 19.563427 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 18.763939 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 18.931593 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 28.6437 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 17.25202 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 10.207996 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 23.496502 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 25.856977 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 43.610676 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 46.760918 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 25.726919 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 30.694344 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 25.912836 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 29.861357 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 29.061731 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg34786, jg9327 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_3798 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah013210 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g153600 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg42254, Sbi_jg44840 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg27279 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00002129 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl35632, Sgl40969 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000002477, gene:ENSEOMG00000015659 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0000850, CQ.Regalona.r1.6BG0000820 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30027550, pistato.v30089760 |
| Apiaceae | Apium graveolens | 1 | AgUnG00032 |
| Arecaceae | Cocos nucifera | 3 | COCNU_02G007610, COCNU_04G011870, COCNU_16G005260 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103700892, gene-LOC103702211, gene-LOC103709662 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_03.1681.V1.1, AsparagusV1_07.799.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri13G33775, Ftri9G23806 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G14180.1, AT5G18260.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10008532m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g12520.v2.2, Sp6g26050.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB02g009260.2N, BniB02g044530.2N, BniB06g039210.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G0145 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl07G0135 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g05500 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g06610 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-7940 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.2091 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00027129 |
| Poaceae | Echinochloa crus-galli | 6 | AH01.1679, AH01.2084, BH01.1877, BH01.2448, CH01.1984 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_2AG0123870, gene-QOZ80_2BG0179490 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0614800.1 |
| Poaceae | Oryza coarctata | 4 | Oco05G012470, Oco06G014000, Oco19G003950, Oco20G003900 |
| Poaceae | Oryza sativa | 2 | LOC_Os03g20980.1, LOC_Os10g26610.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G242700, gene-BS78_01G367800 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0203299, Pt_Chr0203305 |
| Poaceae | Sporobolus alterniflorus | 8 | Chr01G033710, Chr04G010360, Chr06G014370, Chr07G001530 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G546900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC6AG045910, gene_TRIDC6BG053540 |
| Poaceae | Triticum aestivum | 3 | TraesCS6A02G305100.2, TraesCS6B02G333400.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb015540_P002, Zm00001eb223270_P001 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-27920, nbis-gene-3419 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g13209, Zma_g3713 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.227, evm.TU.LG12.1478 |
| Posidoniaceae | Posidonia oceanica | 4 | gene.Posoc02g23670, gene.Posoc02g28240, gene.Posoc04g22610 ... |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_1_RagTag.395, evm.TU.Scaffold_2_RagTag.1854 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-3239, nbisL1-mrna-7793 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-16097, nbisL1-mrna-9596 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-13853 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000009l.181, evm.TU.utg000012l.238 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00005359, Maker00010984 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-12859, nbisL1-mrna-8560 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-16330, nbisL1-mrna-542 |
| Salicaceae | Populus euphratica | 3 | populus_peu16099, populus_peu19407, populus_peu19419 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132642066 |
| Solanaceae | Solanum chilense | 1 | SOLCI002113300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107019199 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.14094_chr05_-, STRG.29365_chr10_- |
| Tamaricaceae | Tamarix chinensis | 2 | TC01G3336, TC03G0726 |
| Zosteraceae | Zostera marina | 1 | Zosma01g04080.v3.1 |