Basic Information
Locus ID:
AgUnG00028
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Protein DEHYDRATION-INDUCED 19 homolog
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ctg1091 | 75277 | 78103 | + | AgUnG00028 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.45 | 23,617.26 Da | 39.96 | 64.57 | -0.49 |
Protein Domain:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_017215855.1 | PREDICTED: protein DEHYDRATION-INDUCED 19 homolog 5-like [Daucus carota subsp. sativus] | 0 |
| Q5JME8 | Protein DEHYDRATION-INDUCED 19 homolog 5 OS=Oryza sativa subsp. japonica OX=39947 GN=DI19-5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6L5BB47 | Zf-Di19 domain-containing protein OS=Apium graveolens OX=4045 GN=AG4045_030342 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 19.113346 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 15.758816 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 18.11009 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 21.15974 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 23.029655 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 7.706542 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 7.648386 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 3.487751 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 75.551613 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 63.039059 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 77.834419 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 68.652679 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 54.54631 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 52.383667 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 22.45624 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 24.61618 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 42.856178 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 30.308138 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 32.52232 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 31.304907 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 32.126961 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 31.06649 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 41.409096 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 40.039192 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 47.770187 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 36.079082 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 39.745342 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 38.462551 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 40.371956 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 9.375199 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 20.972858 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 16.316889 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 7.614875 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 18.48185 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 8.731131 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 11.309919 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 6.678704 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 6.869249 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 46.454082 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 19.232992 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 14.378295 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 7.223802 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 6.670678 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 26.352367 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 29.036512 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 9.452025 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 27.619322 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 28.068838 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 27.839266 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 26.862745 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg18795, jg25935 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_12171, gene_13620 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah000519 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g118210 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg30634, Sbi_jg58635 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg28499 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00014864 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl55127, Sgl60380 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000005917, gene:ENSEOMG00000022303 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0023700, CQ.Regalona.r1.5BG0025180 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30140000 |
| Apiaceae | Apium graveolens | 1 | AgUnG00028 |
| Arecaceae | Cocos nucifera | 1 | scaffold003335G000040 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103717562 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.573.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri18G09975, Ftri1G24231 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G1890 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl01G2059 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno07g12480 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g22660 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG10.657 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00033795 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb8G36360 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.4646, BH02.4711, Contig1204.7 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_1BG0098020 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.1HG0003890.1, HORVU.MOREX.r3.3HG0327790.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_008417, gene-QYE76_044894, gene-QYE76_059112 |
| Poaceae | Oryza coarctata | 4 | Oco01G030970, Oco02G032140, Oco08G007750, Oco09G000420 |
| Poaceae | Oryza sativa | 2 | LOC_Os01g73960.1, LOC_Os05g01730.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G417800 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0500829, Pt_Chr0500922 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr03G024180, Chr05G034810, Chr08G017630 |
| Poaceae | Thinopyrum elongatum | 2 | Tel1E01G055200, Tel3E01G882200 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC1AG002530, gene_TRIDC1BG003370 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS1A02G024600.1, TraesCS1B02G031000.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb130380_P001, Zm00001eb139880_P003 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-28061 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g12013 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG01.2415, evm.TU.LG02.995, evm.TU.LG09.970 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g02770 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_11_RagTag.1081, evm.TU.Scaffold_4_RagTag.427 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-14758, nbisL1-mrna-28934 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-5043, nbisL1-mrna-9532 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-12637, nbisL1-mrna-1899 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000008l.278, evm.TU.utg000010l.150 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00000012, Maker00008820 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-14629, nbisL1-mrna-712 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-1421, nbisL1-mrna-8714 |
| Salicaceae | Populus euphratica | 1 | populus_peu30144 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132601690, gene-LOC132632588 |
| Solanaceae | Solanum chilense | 2 | SOLCI006063500, SOLCI007190800 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107012089, gene-LOC107023097 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_15995 |
| Tamaricaceae | Tamarix chinensis | 1 | TC09G0951 |