Basic Information
Locus ID:
Ag9G02889
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 289725830 | 289727940 | - | Ag9G02889 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.01 | 25,059.63 Da | 35.45 | 85.38 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G07150.1 | 0 | |
| RefSeq | XP_017232318.1 | PREDICTED: uncharacterized protein LOC108206505 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A166FJN7 | MACPF domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_000523 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 2.264028 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 2.339564 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 8.224763 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 5.011783 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 4.485354 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 5.474719 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 3.178579 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 3.841102 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 1.156702 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 1.192498 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 1.404207 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 1.475062 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 0.651547 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 0.376191 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0.532099 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 0.402917 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 0.578694 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 1.072777 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 0.641349 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 0.730731 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 0.696917 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 1.06291 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 0.842871 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 2.018988 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 0.357066 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 0.415604 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 0.773261 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 0.505626 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.067917 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0.474277 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 0.597804 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0.783202 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0.527536 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.464982 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 0.324502 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0.139653 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0.315133 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0.58342 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 1.758716 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 1.368124 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0.406649 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 1.702652 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 3.180787 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 4.30718 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 4.384132 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg36115, jg8048 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_5391 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah028302 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g167850 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg26569, Sbi_jg26572, Sbi_jg33993 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg15093 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00011898 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl73858, Sgl77362 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000042829 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7AG0010060, CQ.Regalona.r1.7BG0012200 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30014340 |
| Apiaceae | Apium graveolens | 1 | Ag9G02889 |
| Arecaceae | Cocos nucifera | 1 | COCNU_11G002660 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103710593 |
| Asteraceae | Flaveria trinervia | 1 | Ftri12G34001 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G07150.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10022223m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g06090.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB01g056730.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G1968 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G2078 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno04g02720 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g08990 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.1583 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00036443 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb4G23971 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.4317, BH02.4348, CH02.4394 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0044460, gene-QOZ80_1BG0094480 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.3HG0309850.1, HORVU.MOREX.r3.3HG0309880.1 |
| Poaceae | Oryza coarctata | 1 | Oco01G028430 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g68960.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G381600 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0600505 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr03G022750, Chr08G019280 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G674200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG060200, gene_TRIDC3BG068020 |
| Poaceae | Triticum aestivum | 7 | TraesCS3A02G424200.1, TraesCS3A02G424800.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb364650_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-11002 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g11808, Zma_g9263 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.1043, evm.TU.LG12.686 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g05960 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_5_RagTag.1219 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-11691 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-11231 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000006l.712 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00013638 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-9830 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-19918 |
| Salicaceae | Populus euphratica | 1 | populus_peu30897 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132610075 |
| Solanaceae | Solanum chilense | 1 | SOLCI006713200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107031518 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.13306_chr07_+ |