Basic Information
Locus ID:
Ag9G02882
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Belongs to the NPH3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 289624676 | 289627404 | + | Ag9G02882 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.84 | 68,878.76 Da | 49.96 | 90.46 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00651 | BTB/POZ domain | 28 | 113 | 2.8E-6 | IPR000210 |
| Pfam | PF03000 | NPH3 family | 202 | 459 | 2.0E-89 | IPR027356 |
| SUPERFAMILY | SSF54695 | POZ domain | 17 | 114 | 7.22E-15 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 1 | 176 | 2.2E-11 | IPR011333 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 29 | 97 | 9.082443 | IPR000210 |
| ProSiteProfiles | PS51649 | NPH3 domain profile. | 202 | 484 | 90.409042 | IPR027356 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 580 | 610 | - | - |
| Coils | Coil | Coil | 522 | 563 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G48800.1 | Phototropic-responsive NPH3 family protein. | 0 |
| RefSeq | XP_017230926.1 | PREDICTED: BTB/POZ domain-containing protein At5g48800-like isoform X1 [Daucus carota subsp. sativus] | 0 |
| Q9FKB6 | BTB/POZ domain-containing protein At5g48800 OS=Arabidopsis thaliana OX=3702 GN=At5g48800 PE=2 SV=1 | 0 | |
| TrEMBL | A0A166FJT7 | NPH3 domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_000528 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 0.07908 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 0 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 0 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 0 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 0 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 0 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 0 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 1.485952 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 0.714656 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 0.995534 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 0.962202 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 0.707799 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 0.335234 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0.227295 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 0.475928 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 0.415405 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 3.28834 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 2.404961 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 4.239062 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 2.296217 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 0.297072 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 0.4176 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 0.835353 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 1.386912 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 1.784754 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 1.053898 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 1.267099 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 1.41423 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.535065 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.127542 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.113434 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0.043812 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 0.055973 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0.028625 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.069588 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 0.3255 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0.998388 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 5.349412 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 1.982653 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 9.640595 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 1.53943 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 4.531123 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 0.817737 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 1.157897 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 0.776262 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg16814, jg3141, jg36128 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_14603, gene_6475 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah028262, Ah031576 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_7g156670, BVRB_7g167550 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg2113, Sbi_jg26541, Sbi_jg34026, Sbi_jg34397 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg15068, Seu_jg2654 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00005841, GOSA_00011926 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl73827, Sgl77329 |
| Amaranthaceae | Chenopodium album | 7 | gene:ENSEOMG00000007368, gene:ENSEOMG00000007614 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.7AG0010380, CQ.Regalona.r1.7AG0023310 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30014530, pistato.v30269460 |
| Apiaceae | Apium graveolens | 3 | Ag10G00758, Ag10G01000, Ag9G02882 |
| Arecaceae | Cocos nucifera | 2 | COCNU_06G007760, COCNU_12G006100 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103696661, gene-LOC103705965, gene-LOC103716687 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_02.1754.V1.1, AsparagusV1_02.897.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri10G07468, Ftri15G10167, Ftri3G28858 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT3G08570.1, AT3G08660.1, AT5G48800.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10003813m.g.v1.0, Thhalv10020370m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 3 | Sp1g26430.v2.2, Sp2g19200.v2.2, Sp3g07100.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB01g055880.2N, BniB02g069840.2N, BniB04g046070.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq06G1999, Ceq08G0865 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl06G2107, Cgl08G0883 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g12840 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate04g22900, gene.Thate06g06410 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 3 | nbisL1-mrna-11945, nbisL1-mrna-11946, nbisL1-mrna-9753 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG01.838, evm.TU.LG04.1555 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00006986, Pov_00011570 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb2G09506, Lb2G09511, Lb4G23994 |
| Poaceae | Echinochloa crus-galli | 8 | AH04.94, AH05.22, BH04.102, BH05.47, CH04.112, CH04.947 ... |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_9AG0672680, gene-QOZ80_9BG0696290 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0464130.1 |
| Poaceae | Lolium multiflorum | 4 | gene-QYE76_003588, gene-QYE76_008143, gene-QYE76_008144 ... |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_08G016900 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0702905 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr04G021050, Chr06G022660, Chr31G006670 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G256300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG024500, gene_TRIDC5BG025700 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G146300.1, TraesCS5B02G145100.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb405800_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-42510 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g5010 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG03.1023, evm.TU.LG07.210, evm.TU.LG12.709 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc01g27250, gene.Posoc05g02180 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_2_RagTag.522, evm.TU.Scaffold_5_RagTag.1206 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-11675, nbisL1-mrna-4669 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-2074, nbisL1-mrna-9077 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-11243, nbisL1-mrna-9661 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000006l.701, evm.TU.utg000009l.645 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00005358, Maker00014139 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-2616, nbisL1-mrna-9842 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-16604, nbisL1-mrna-19904 |
| Salicaceae | Populus euphratica | 2 | populus_peu25233, populus_peu30914 |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132605688, gene-LOC132610939, gene-LOC132631211 |
| Solanaceae | Solanum chilense | 3 | SOLCI000237700, SOLCI000433200, SOLCI004588400 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107023716, gene-LOC107029677, gene-LOC107029734 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_7168, gene_7453 |
| Tamaricaceae | Tamarix chinensis | 2 | TC01G0631, TC07G0950 |