halophFGD

Basic Information

Locus ID: Ag9G02871

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Belongs to the protein kinase superfamily

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr9	289539943	289542645	+	Ag9G02871

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.83	72,355.49 Da	39.05	102.87	0.00

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF07714	Protein tyrosine and serine/threonine kinase	371	641	1.1E-23	IPR001245
Pfam	PF13855	Leucine rich repeat	198	256	2.3E-8	IPR001611
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	372	642	5.48E-46	IPR011009
SUPERFAMILY	SSF52058	L domain-like	58	263	5.53E-29	-
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	444	659	1.9E-37	-
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	192	290	1.6E-20	IPR032675
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	30	191	6.1E-22	IPR032675
Gene3D	G3DSA:3.30.200.20	Phosphorylase Kinase; domain 1	350	443	1.4E-10	-
ProSiteProfiles	PS50011	Protein kinase domain profile.	367	666	25.403757	IPR000719
MobiDBLite	mobidb-lite	consensus disorder prediction	647	666	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	329	348	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	646	666	-	-

Gene Ontology

Biological Process:

GO:0006468 (protein phosphorylation)

Molecular Function:

GO:0004672 (protein kinase activity) GO:0005515 (protein binding) GO:0005524 (ATP binding)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G24660.1	transmembrane kinase-like 1. member of Receptor kinase-like protein family
RefSeq	XP_017230000.1	PREDICTED: putative kinase-like protein TMKL1 [Daucus carota subsp. sativus]
Swiss-Prot	P33543	Putative kinase-like protein TMKL1 OS=Arabidopsis thaliana OX=3702 GN=TMKL1 PE=1 SV=1
TrEMBL	A0A5B7ATY1	Putative kinase-like protein TMKL1 (Fragment) OS=Davidia involucrata OX=16924 GN=Din_029588 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	2.472908	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	1.369396	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	0.658049	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	1.71129	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	1.41414	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	0.401042	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	0.447777	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	0.156541	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	23.259384	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	21.195856	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	26.200773	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	25.49168	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	19.150969	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	15.231462	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	1.365205	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	3.62926	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	5.886172	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	5.553315	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	3.741218	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	3.014496	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	3.228526	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	18.479462	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	20.660147	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	22.788376	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	14.351603	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	9.604446	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	6.604298	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	6.495654	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	9.656504	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0.384619		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0.639138		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0.628608		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	0.067436		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	8.022553		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	0.113584		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	0.198688		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0.022943		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	0.08565		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	8.294044	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	2.053702	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	0.195586	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	0.042912	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	0.177486	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	0.916667	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	0.617586	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	0.065008	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	2.487275	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	20.265636	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	23.88167	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	23.103966	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	2	jg16240, jg35489
Aizoaceae	Mesembryanthemum crystallinum	1	gene_5360
Amaranthaceae	Atriplex hortensis	1	Ah028238
Amaranthaceae	Beta vulgaris	1	BVRB_7g167230
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg26515, Sbi_jg34049
Amaranthaceae	Salicornia europaea	1	Seu_jg15046
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00011946
Amaranthaceae	Suaeda glauca	2	Sgl73797, Sgl77302
Amaranthaceae	Chenopodium album	1	gene:ENSEOMG00000035805
Amaranthaceae	Chenopodium quinoa	2	CQ.Regalona.r1.7AG0010640, CQ.Regalona.r1.7BG0012790
Apiaceae	Apium graveolens	2	Ag9G02821, Ag9G02871
Arecaceae	Cocos nucifera	2	COCNU_08G011270, COCNU_09G008850
Arecaceae	Phoenix dactylifera	2	gene-LOC103706992, gene-LOC103714907
Asparagaceae	Asparagus officinalis	1	AsparagusV1_01.715.V1.1
Asteraceae	Flaveria trinervia	1	Ftri12G18139
Brassicaceae	Arabidopsis thaliana	1	AT3G24660.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10002428m.g.v1.0, Thhalv10024625m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp3g22430.v2.2, Sp7g10690.v2.2
Brassicaceae	Brassica nigra	1	BniB03g025800.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq06G2025
Casuarinaceae	Casuarina glauca	1	Cgl06G2133
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate08g23860
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG04.1515
Plantaginaceae	Plantago ovata	1	Pov_00024531
Plumbaginaceae	Limonium bicolor	2	Lb2G13942, Lb5G28682
Poaceae	Echinochloa crus-galli	1	CH08.2769
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.2HG0109300.1.CDS1 ... HORVU.MOREX.r3.5HG0458330.1.CDS1, HORVU.MOREX.r3.7HG0717400.1.CDS1
Poaceae	Lolium multiflorum	1	gene-QYE76_030858
Poaceae	Oryza coarctata	2	Oco15G014950, Oco16G014210
Poaceae	Oryza sativa	1	LOC_Os08g45060.1
Poaceae	Puccinellia tenuiflora	1	Pt_Chr0306716
Poaceae	Sporobolus alterniflorus	2	Chr11G019160, Chr11G019410
Poaceae	Thinopyrum elongatum	3	Tel2E01G199200, Tel7E01G621000, Tel7E01G621500
Poaceae	Triticum dicoccoides	4	gene_TRIDC2AG010550, gene_TRIDC2BG012810 ... gene_TRIDC7AG050260, gene_TRIDC7BG043510
Poaceae	Triticum aestivum	6	TraesCS2A02G091900.1, TraesCS2B02G106900.1.cds1 ... TraesCS2D02G091000.1.cds1, TraesCS7A02G359300.1.cds1, TraesCS7B02G267900.1.cds1, TraesCS7D02G363200.1.cds1
Poaceae	Zea mays	1	Zm00001eb038680_P001
Poaceae	Zoysia japonica	1	nbis-gene-42902
Poaceae	Zoysia macrostachya	1	Zma_g23453
Portulacaceae	Portulaca oleracea	4	evm.TU.LG01.460, evm.TU.LG03.1001, evm.TU.LG04.299 ... evm.TU.LG12.735
Posidoniaceae	Posidonia oceanica	1	gene.Posoc06g02700
Rhizophoraceae	Bruguiera sexangula	1	evm.TU.Scaffold_5_RagTag.1185
Rhizophoraceae	Carallia pectinifolia	1	nbisL1-mrna-11653
Rhizophoraceae	Ceriops tagal	1	nbisL1-mrna-9062
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-11259, nbisL1-mrna-11260
Rhizophoraceae	Kandelia candel	1	evm.TU.utg000006l.685
Rhizophoraceae	Kandelia obovata	1	Maker00013655
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-1391, nbisL1-mrna-17265, nbisL1-mrna-9858
Rhizophoraceae	Rhizophora mangle	1	nbisL1-mrna-19885
Salicaceae	Populus euphratica	1	populus_peu30812
Solanaceae	Lycium barbarum	1	gene-LOC132610237
Solanaceae	Solanum chilense	1	SOLCI002915700
Solanaceae	Solanum pennellii	1	gene-LOC107029208
Tamaricaceae	Reaumuria soongarica	1	STRG.387_chr01_+
Tamaricaceae	Tamarix chinensis	1	TC01G0465