Basic Information
Locus ID:
Ag9G02821
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Kinase-like protein TMKL1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 288841991 | 288842299 | + | Ag9G02821 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.85 | 11,862.65 Da | 42.72 | 111.77 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G24660.1 | transmembrane kinase-like 1. member of Receptor kinase-like protein family | 0 |
| RefSeq | XP_017230000.1 | PREDICTED: putative kinase-like protein TMKL1 [Daucus carota subsp. sativus] | 0 |
| P33543 | Putative kinase-like protein TMKL1 OS=Arabidopsis thaliana OX=3702 GN=TMKL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2G9IAW5 | Serine/threonine protein kinase OS=Handroanthus impetiginosus OX=429701 GN=CDL12_00349 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 9.262704 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 6.076651 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 5.115608 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 7.43393 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 11.294279 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 10.810825 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 12.31035 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 8.573749 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 15.161596 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 19.326588 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 19.036449 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 16.101843 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 21.350649 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 10.428233 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 15.276149 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 17.343174 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 45.880253 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 17.329359 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 16.003229 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 16.673258 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 18.567516 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 37.604458 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 30.153139 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 23.619116 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 33.006054 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 10.384485 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 18.201401 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 22.971384 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 11.31219 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 17.925062 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 22.639338 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 13.706652 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 4.2209 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 18.35334 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 11.437506 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 10.176958 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 13.496382 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 9.741969 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 14.441586 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 11.116585 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 15.914766 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 16.418079 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 24.630629 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 36.506348 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 35.047115 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 14.316483 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 38.651924 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 40.265121 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 53.921227 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 59.634296 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg16240, jg35489 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_5360 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah028238 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g167230 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg26515, Sbi_jg34049 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg15046 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00011946 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl73797, Sgl77302 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000035805 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7AG0010640, CQ.Regalona.r1.7BG0012790 |
| Apiaceae | Apium graveolens | 2 | Ag9G02821, Ag9G02871 |
| Arecaceae | Cocos nucifera | 2 | COCNU_08G011270, COCNU_09G008850 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103706992, gene-LOC103714907 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.715.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri12G18139 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G24660.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10002428m.g.v1.0, Thhalv10024625m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp3g22430.v2.2, Sp7g10690.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB03g025800.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G2025 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G2133 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g23860 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.1515 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00024531 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb2G13942, Lb5G28682 |
| Poaceae | Echinochloa crus-galli | 1 | CH08.2769 |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.2HG0109300.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_030858 |
| Poaceae | Oryza coarctata | 2 | Oco15G014950, Oco16G014210 |
| Poaceae | Oryza sativa | 1 | LOC_Os08g45060.1 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0306716 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr11G019160, Chr11G019410 |
| Poaceae | Thinopyrum elongatum | 3 | Tel2E01G199200, Tel7E01G621000, Tel7E01G621500 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC2AG010550, gene_TRIDC2BG012810 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS2A02G091900.1, TraesCS2B02G106900.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb038680_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-42902 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g23453 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG01.460, evm.TU.LG03.1001, evm.TU.LG04.299 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g02700 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_5_RagTag.1185 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-11653 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-9062 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-11259, nbisL1-mrna-11260 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000006l.685 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00013655 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-1391, nbisL1-mrna-17265, nbisL1-mrna-9858 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-19885 |
| Salicaceae | Populus euphratica | 1 | populus_peu30812 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132610237 |
| Solanaceae | Solanum chilense | 1 | SOLCI002915700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107029208 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.387_chr01_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G0465 |