Basic Information
Locus ID:
Ag9G02820
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 288838930 | 288841844 | + | Ag9G02820 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.64 | 19,987.19 Da | 44.36 | 61.77 | -0.61 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 9 | 45 | 0.039 | IPR001680 |
| SUPERFAMILY | SSF50974 | Nitrous oxide reductase, N-terminal domain | 7 | 132 | 6.28E-8 | IPR011045 |
| Gene3D | G3DSA:2.130.10.10 | - | 2 | 74 | 8.3E-10 | IPR015943 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 136 | 175 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G01330.1 | nucleotide binding. | 0 |
| RefSeq | XP_017255407.1 | PREDICTED: actin-interacting protein 1-2-like [Daucus carota subsp. sativus] | 0 |
| Q9ZU34 | Actin-interacting protein 1-1 OS=Arabidopsis thaliana OX=3702 GN=AIP1-1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8J5L0S6 | WD_REPEATS_REGION domain-containing protein OS=Zingiber officinale OX=94328 GN=ZIOFF_040212 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 9.879623 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 7.471856 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 6.201684 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 7.460194 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 8.657245 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 11.704597 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 9.485202 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 9.554923 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 14.783327 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 13.852987 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 23.198029 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 16.89275 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 20.344744 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 12.471003 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 17.281132 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 20.356121 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 26.112444 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 25.062075 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 16.755619 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 16.192648 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 20.154877 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 18.753311 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 25.141695 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 19.311968 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 24.927397 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 12.271463 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 22.176785 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 26.631521 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 11.793854 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 7.739356 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 17.153687 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 9.941893 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 7.967454 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 8.147797 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 8.618011 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 7.102464 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 5.400997 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 5.844928 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 16.743937 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 12.561927 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 13.094624 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 18.376358 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 26.087965 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 38.39011 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 38.341423 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 15.464361 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 40.269707 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 19.865105 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 32.866837 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 24.128845 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg27003 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_18574 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah025366 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g142710 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg12911, Sbi_jg52955 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg8902 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00023461 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl31060, Sgl36432 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000001482, gene:ENSEOMG00000001942 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0012400, CQ.Regalona.r1.6BG0013000 |
| Anacardiaceae | Pistacia vera | 3 | pistato.v30150180, pistato.v30216710, pistato.v30216990 |
| Apiaceae | Apium graveolens | 3 | Ag3G02196, Ag7G01231, Ag9G02820 |
| Arecaceae | Cocos nucifera | 2 | COCNU_02G005740, COCNU_03G009290 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103696946, gene-LOC103718996 |
| Asteraceae | Flaveria trinervia | 1 | Ftri4G32192 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT2G01330.1, AT3G18060.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10000821m.g.v1.0, Thhalv10020321m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp2g12780.v2.2, Sp3g16180.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g046530.2N, BniB04g014820.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G2859 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G3006 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g14440 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate07g20160 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG10.13 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00033251 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb0G36913, Lb0G37557, Lb2G13245 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.1254, BH02.838, CH02.956 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0007980, gene-QOZ80_1BG0056760 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0222780.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_049136 |
| Poaceae | Oryza coarctata | 2 | Oco01G000970, Oco02G001000 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g03510.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G081000 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0205513, Pt_Chr0206978 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr02G024520, Chr03G003360, Chr05G002430, Chr20G008630 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G060700 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG005380, gene_TRIDC3BG004980 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G047800.1, TraesCS3B02G034400.1 ... |
| Poaceae | Zea mays | 8 | Zm00001eb076360_P001, Zm00001eb125700_P001 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-7093 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g9879 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG13.802, evm.TU.LG21.477 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc04g21510, gene.Posoc04g21560 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_11_RagTag.732 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-14401 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-14439 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-12347 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000061l.18 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00008891 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-14443, nbisL1-mrna-934 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-24870, nbisL1-mrna-8406 |
| Salicaceae | Populus euphratica | 2 | populus_peu28281, populus_peu29733 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132633242 |
| Solanaceae | Solanum chilense | 1 | SOLCI000442600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107014336 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.9226_chr03_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC11G0994 |
| Zosteraceae | Zostera marina | 1 | Zosma04g19370.v3.1 |