Basic Information
Locus ID:
Ag9G02796
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Short Name:
MURE
Description:
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 288534761 | 288537823 | - | Ag9G02796 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.52 | 78,787.15 Da | 33.85 | 86.45 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08245 | Mur ligase middle domain | 299 | 504 | 1.3E-51 | IPR013221 |
| Pfam | PF02875 | Mur ligase family, glutamate ligase domain | 525 | 608 | 2.0E-17 | IPR004101 |
| Pfam | PF01225 | Mur ligase family, catalytic domain | 210 | 286 | 1.5E-7 | IPR000713 |
| SUPERFAMILY | SSF53623 | MurD-like peptide ligases, catalytic domain | 290 | 522 | 7.06E-61 | IPR036565 |
| SUPERFAMILY | SSF63418 | MurE/MurF N-terminal domain | 187 | 290 | 9.02E-19 | IPR035911 |
| SUPERFAMILY | SSF53244 | MurD-like peptide ligases, peptide-binding domain | 525 | 697 | 1.01E-37 | IPR036615 |
| Gene3D | G3DSA:3.40.1190.10 | - | 290 | 528 | 6.4E-63 | IPR036565 |
| Gene3D | G3DSA:3.90.190.20 | - | 530 | 707 | 9.4E-52 | IPR036615 |
| Gene3D | G3DSA:3.40.1390.10 | - | 188 | 288 | 2.4E-22 | - |
| TIGRFAM | TIGR01085 | murE: UDP-N-acetylmuramyl-tripeptide synthetase | 209 | 697 | 4.4E-135 | IPR005761 |
| Hamap | MF_00208 | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [murE]. | 187 | 696 | 31.278049 | IPR005761 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 41 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 135 | 158 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G63680.1 | acid-amino acid ligases;ligases;ATP binding;ATP binding;ligases. Encodes AtMurE, a homolog of the bacterial MurE that catalyze the ATP-dependent formation of UDP-N-acetylmuramic acid-tripeptide in bacterial peptidoglycan biosynthesis. Localized to plastids. AtMurE is involved in chloroplast biogenesis. | 0 |
| RefSeq | XP_017229861.1 | PREDICTED: UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Daucus carota subsp. sativus] | 0 |
| F4I3P9 | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase MurE homolog, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MURE PE=1 SV=1 | 0 | |
| TrEMBL | A0A166FMG5 | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_000617 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 13.607687 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 9.797404 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 6.603331 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 8.699612 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 8.371554 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 7.766294 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 4.987626 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 4.067113 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 18.207819 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 18.840508 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 20.711603 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 18.266617 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 18.296621 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 15.646326 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 4.024448 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 5.014236 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 4.035459 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 12.120648 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 12.01251 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 13.29441 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 11.829566 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 4.37272 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 5.017559 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 6.099505 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 5.623538 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 13.445292 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 11.458015 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 15.616666 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 11.261037 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 2.501223 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 6.014949 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 4.797314 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 22.042122 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 11.271554 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 15.693277 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 12.216969 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 2.148245 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 4.679002 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 19.760229 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 8.317465 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 8.974461 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 2.659145 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 3.56223 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 13.632306 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 7.357776 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 6.756663 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 6.414914 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 8.917788 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 5.897064 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 7.174663 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg7624 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_1824 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah026559 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g137540 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg14744, Sbi_jg55521 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg26072 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00023100 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl34767, Sgl40137 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000000736, gene:ENSEOMG00000005264 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0017820, CQ.Regalona.r1.6BG0018910 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30104760, pistato.v30135950 |
| Apiaceae | Apium graveolens | 1 | Ag9G02796 |
| Arecaceae | Cocos nucifera | 3 | COCNU_07G011720, COCNU_08G010400, COCNU_10G008540 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103695983, gene-LOC103717440, gene-LOC120104388 |
| Asparagaceae | Asparagus officinalis | 4 | AsparagusV1_07.2213.V1.1, AsparagusV1_07.2214.V1.1 ... |
| Asteraceae | Flaveria trinervia | 1 | Ftri3G33313 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G63680.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10023292m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g00970.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB04g024040.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G0306 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G0385 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno08g03740 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0408s00010.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g10940 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-11251, nbisL1-mrna-11253 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG10.1418 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00003200 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G09280 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.3002, BH01.3335, CH01.3581 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0115790, gene-QOZ80_2BG0169660 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0055820.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_012479 |
| Poaceae | Oryza coarctata | 2 | Oco19G009560, Oco20G009430 |
| Poaceae | Oryza sativa | 1 | LOC_Os10g40130.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G293900 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0503120, Pt_Chr0503148, Pt_Chr0503160, Pt_Chr0701884 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr09G004440, Chr13G020480 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G357900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG031420, gene_TRIDC1BG036880 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G208400.1, TraesCS1B02G222400.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb391750_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-47008 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g15634 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG18.612, evm.TU.LG26.416 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g05700 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_16_RagTag.173 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-22411 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-4694 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-20324, nbisL1-mrna-20325 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000022l.387 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00014280 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-3528 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-6688 |
| Salicaceae | Populus euphratica | 1 | populus_peu03573 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132634909 |
| Solanaceae | Solanum chilense | 1 | SOLCI004163000 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107028715 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.20586_chr08_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC06G0220 |
| Zosteraceae | Zostera marina | 1 | Zosma03g26790.v3.1 |