Basic Information
Locus ID:
Ag9G02776
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
isoform X1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 288409675 | 288421520 | + | Ag9G02776 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.70 | 94,570.34 Da | 58.00 | 75.48 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16650 | SP-RING_PIAS_like | 293 | 339 | 4.33725E-22 | - |
| Pfam | PF02891 | MIZ/SP-RING zinc finger | 293 | 339 | 3.0E-20 | IPR004181 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 265 | 376 | 3.9E-35 | IPR013083 |
| ProSiteProfiles | PS51044 | Zinc finger SP-RING-type profile. | 280 | 357 | 37.13694 | IPR004181 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 759 | 795 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 633 | 654 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G41580.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_017237104.1 | PREDICTED: E4 SUMO-protein ligase PIAL2 isoform X1 [Daucus carota subsp. sativus] | 0 |
| F4JYG0 | E4 SUMO-protein ligase PIAL2 OS=Arabidopsis thaliana OX=3702 GN=PIAL2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A166FN14 | SP-RING-type domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_000636 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 1.684062 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 8.323534 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 2.664058 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 2.854621 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 3.142206 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 1.044926 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 4.698023 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 1.248467 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 9.98889 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 9.909434 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 11.723622 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 7.303454 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 8.087616 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 8.214696 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 6.46315 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 7.155451 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 5.975531 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 4.614336 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 3.665778 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 4.873177 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 7.211291 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 5.787797 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 6.904954 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 3.64676 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 4.647025 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 4.814633 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 4.575006 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 6.051347 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 6.26307 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 1.8449 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.033415 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.187718 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0.830943 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 9.266922 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 1.137504 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 3.126967 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.183805 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 1.365425 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 2.387833 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 1.101913 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0.770023 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 2.832772 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 1.578498 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 10.059523 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 6.004667 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 3.410866 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 4.910094 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 19.888628 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 16.06489 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 13.319692 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg23503, jg23504, jg23505, jg7665 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_14703 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah004548 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g099780 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg23947, Sbi_jg7772 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg12251 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00001130, GOSA_00001131 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl52121, Sgl57390 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000004715, gene:ENSEOMG00000024019 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0006690, CQ.Regalona.r1.5BG0006970 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30135330 |
| Apiaceae | Apium graveolens | 3 | Ag5G01044, Ag7G00162, Ag9G02776 |
| Arecaceae | Cocos nucifera | 2 | COCNU_03G012330, COCNU_14G002070 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103709002, gene-LOC103710882 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_05.650.V1.1, AsparagusV1_06.1420.V1.1 ... |
| Asteraceae | Flaveria trinervia | 4 | Ftri13G02349, Ftri15G04516, Ftri3G16700, Ftri7G11976 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G08910.1, AT5G41580.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10007035m.g.v1.0, Thhalv10027658m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g07530.v2.2, Sp7g00460.v2.2 |
| Brassicaceae | Brassica nigra | 5 | BniB01g024830.2N, BniB02g004510.2N, BniB03g003000.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G0267 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G0316 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g12180 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate03g16730, gene.Thate09g06650 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG10.1462, evm.TU.LG10.1463 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00005274, Pov_00028366 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb2G08295, Lb4G22008, Lb4G22072 |
| Poaceae | Echinochloa crus-galli | 3 | AH06.364, BH06.481, CH06.481 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_5AG0389310 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0655510.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_028446 |
| Poaceae | Oryza coarctata | 2 | Oco11G003040, Oco12G002990 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g06870.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G054300 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0402079, Pt_Chr0402115 |
| Poaceae | Sporobolus alterniflorus | 7 | Chr04G014810, Chr11G022190, Chr14G002310, Chr19G011080 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G264700 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG014780, gene_TRIDC7BG004030 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G126400.2, TraesCS7B02G025700.2 ... |
| Poaceae | Zea mays | 1 | Zm00001eb375680_P002 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-36651, nbis-gene-5104, nbis-gene-5105 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g25003, Zma_g29157 |
| Portulacaceae | Portulaca oleracea | 6 | evm.TU.LG04.3322, evm.TU.LG10.455, evm.TU.LG16.275 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc03g22820, gene.Posoc09g07930 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-18251, nbisL1-mrna-22379 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-4409 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-20353 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000022l.410 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00014312 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-3550 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-6716 |
| Salicaceae | Populus euphratica | 1 | populus_peu34461 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132609914 |
| Solanaceae | Solanum chilense | 1 | SOLCI005109000 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107008392, gene-LOC107025269, gene-LOC107028827 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_14758 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G3190 |
| Zosteraceae | Zostera marina | 2 | Zosma04g03260.v3.1, Zosma05g03750.v3.1 |