halophFGD

Basic Information

Locus ID: Ag9G02775

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: A Receptor for Ubiquitination Targets

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr9	288375468	288382654	-	Ag9G02775

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.05	46,110.23 Da	34.45	91.87	-0.03

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00646	F-box domain	67	104	1.2E-5	IPR001810
SUPERFAMILY	SSF81383	F-box domain	65	102	4.06E-6	IPR036047
SMART	SM00256	fbox_2	67	105	4.2E-4	IPR001810

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

Best hit

Source	Best Hit ID	Description	E-value
RefSeq	XP_017235404.1	PREDICTED: uncharacterized protein LOC108209152 isoform X1 [Daucus carota subsp. sativus]	0
TrEMBL	A0A2R6RJF8	F-box protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc05590 PE=4 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	5.136482	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	7.953853	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	2.678066	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	3.265219	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	2.939936	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	2.274044	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	3.908984	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	1.906775	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	9.395687	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	9.464307	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	9.894018	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	8.382389	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	10.642481	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	6.493589	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	12.938566	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	13.121922	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	14.590606	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	17.129219	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	19.389673	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	9.970496	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	15.648635	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	9.005005	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	7.571054	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	12.687262	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	12.494984	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	24.742521	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	15.296392	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	21.192259	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	23.319126	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	4.97918		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	5.401141		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	3.68155		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	3.232739		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	5.300448		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	3.1569		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	4.653681		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	1.967344		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	2.451797		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	23.384598	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	21.153725	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	18.417473	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	13.950329	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	6.641597	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	11.893135	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	12.335999	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	9.197065	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	7.379158	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	16.736586	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	20.344698	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	17.618719	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Anacardiaceae	Pistacia vera	1	pistato.v30052300
Apiaceae	Apium graveolens	4	Ag11G04152, Ag11G04154, Ag1G00079, Ag9G02775
Asteraceae	Flaveria trinervia	3	Ftri5G07866, Ftri5G20394, Ftri5G31736