halophFGD

Basic Information

Locus ID: Ag9G02771

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Ribosomal L25p family

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr9	288324334	288331230	+	Ag9G02771

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.66	30,515.17 Da	37.44	99.60	-0.35

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd00495	Ribosomal_L25_TL5_CTC	54	160	2.8911E-12	IPR029751
Pfam	PF01386	Ribosomal L25p family	57	158	7.4E-9	IPR029751
Pfam	PF14693	Ribosomal protein TL5, C-terminal domain	168	250	8.1E-22	IPR020057
SUPERFAMILY	SSF50715	Ribosomal protein L25-like	54	255	1.64E-34	IPR011035
Gene3D	G3DSA:2.170.120.20	Ribosomal protein L25, beta domain	166	257	7.6E-19	IPR037121
Gene3D	G3DSA:2.40.240.10	Ribosomal Protein L25; Chain P	54	161	2.2E-8	IPR020056
Hamap	MF_01334	50S ribosomal protein L25 [rplY].	53	251	19.132347	IPR001021
MobiDBLite	mobidb-lite	consensus disorder prediction	251	274	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	252	274	-	-

Gene Ontology

Biological Process:

GO:0006412 (translation)

Molecular Function:

GO:0003735 (structural constituent of ribosome) GO:0008097 (5S rRNA binding)

Cellular Component:

GO:0005840 (ribosome)

KEGG Pathway

KO Term:

K02897 (large subunit ribosomal protein L25)

Pathway:

ko03010 (Ribosome) map03010 (Ribosome)

Best hit

Source	Best Hit ID	Description
TAIR	AT4G23620.1	Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain.
RefSeq	XP_017230828.1	PREDICTED: 50S ribosomal protein L25 [Daucus carota subsp. sativus]
Swiss-Prot	Q3SPM6	Large ribosomal subunit protein bL25 OS=Nitrobacter winogradskyi (strain ATCC 25391 / DSM 10237 / CIP 104748 / NCIMB 11846 / Nb-255) OX=323098 GN=rplY PE=3 SV=1
TrEMBL	A0A166FN53	Ribosomal_TL5_C domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_000640 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	45.739265	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	27.815826	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	24.293974	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	20.832369	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	23.185246	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	19.662018	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	18.846329	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	17.783688	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	32.652809	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	30.807747	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	31.804079	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	38.945053	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	32.233692	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	27.579981	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	9.860071	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	15.01049	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	17.706993	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	20.712679	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	22.278435	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	23.429356	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	22.944904	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	20.696379	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	17.511387	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	23.74663	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	22.622171	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	19.185312	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	24.048172	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	19.197197	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	20.68022	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	3.042823		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	6.830019		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	5.457194		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	21.086376		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	23.624388		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	27.963068		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	16.544504		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	9.105222		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	12.578453		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	14.428914	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	14.13912	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	7.41128	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	12.4977	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	7.702212	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	22.045925	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	14.478046	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	20.019398	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	9.76037	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	38.344364	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	35.250362	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	34.658531	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	3	jg17464, jg40068, jg7671
Aizoaceae	Mesembryanthemum crystallinum	1	gene_14698
Amaranthaceae	Atriplex hortensis	1	Ah004537
Amaranthaceae	Beta vulgaris	2	BVRB_5g099720, BVRB_6g134520
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg12971, Sbi_jg23953, Sbi_jg52896, Sbi_jg7780
Amaranthaceae	Salicornia europaea	2	Seu_jg12245, Seu_jg8964
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00001120, GOSA_00010263
Amaranthaceae	Suaeda glauca	4	Sgl33987, Sgl39382, Sgl52128, Sgl57399
Amaranthaceae	Chenopodium album	5	gene:ENSEOMG00000001951, gene:ENSEOMG00000006475 ... gene:ENSEOMG00000024169, gene:ENSEOMG00000025404, gene:ENSEOMG00000044924
Amaranthaceae	Chenopodium quinoa	5	CQ.Regalona.r1.5AG0006630, CQ.Regalona.r1.5BG0006890 ... CQ.Regalona.r1.6AG0024700, CQ.Regalona.r1.6BG0026120, CQ.Regalona.r1.8BG0022080
Anacardiaceae	Pistacia vera	1	pistato.v30206780
Apiaceae	Apium graveolens	3	Ag4G01063, Ag9G01262, Ag9G02771
Arecaceae	Cocos nucifera	3	COCNU_06G000890, COCNU_06G017520, COCNU_14G010460
Arecaceae	Phoenix dactylifera	2	gene-LOC103697155, gene-LOC103709224
Asparagaceae	Asparagus officinalis	2	AsparagusV1_01.2029.V1.1, AsparagusV1_07.2941.V1.1
Asteraceae	Flaveria trinervia	2	Ftri1G29466, Ftri9G29306
Brassicaceae	Arabidopsis thaliana	2	AT4G23620.2, AT5G66860.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10004830m.g.v1.0, Thhalv10026041m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp2g29800.v2.2, Sp7g21540.v2.2
Brassicaceae	Brassica nigra	7	BniB03g013580.2N, BniB04g010650.2N, BniB05g013580.2N ... BniB05g047230.2N, BniB06g015150.2N, BniB07g020750.2N, BniB07g044000.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq08G1439
Casuarinaceae	Casuarina glauca	1	Cgl08G1470
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno06g03010, gene.Cymno11g03240
Dunaliellaceae	Dunaliella salina	1	Dusal.0369s00011.v1.0
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate02g34010, gene.Thate05g15250
Malvaceae	Hibiscus hamabo Siebold & Zucc.	2	nbisL1-mrna-1514, nbisL1-mrna-6620
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG02.2189, evm.TU.LG02.2387, evm.TU.LG10.1470
Plantaginaceae	Plantago ovata	2	Pov_00029152, Pov_00029304
Plumbaginaceae	Limonium bicolor	2	Lb2G08463, Lb5G27718
Poaceae	Echinochloa crus-galli	7	AH01.1152, AH02.2205, BH01.1534, BH02.2280, CH01.1502 ... CH01.1507, CH02.2443
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_1AG0022980, gene-QOZ80_1BG0073070 ... gene-QOZ80_3AG0225330, gene-QOZ80_3BG0271160
Poaceae	Lolium multiflorum	2	gene-QYE76_053546, gene-QYE76_063620
Poaceae	Oryza coarctata	4	Oco01G013770, Oco02G013900, Oco05G018130, Oco06G018950
Poaceae	Oryza sativa	3	LOC_Os01g41030.1, LOC_Os03g41612.1, LOC_Os05g18750.1
Poaceae	Paspalum vaginatum	2	gene-BS78_01G153400, gene-BS78_03G181500
Poaceae	Puccinellia tenuiflora	4	Pt_Chr0104350, Pt_Chr0104386, Pt_Chr0603185, Pt_Chr0603209
Poaceae	Sporobolus alterniflorus	6	Chr02G016460, Chr03G010170, Chr05G017460, Chr08G010440 ... Chr12G026840, Chr20G007340
Poaceae	Thinopyrum elongatum	2	Tel3E01G368200, Tel4E01G129300
Poaceae	Triticum dicoccoides	4	gene_TRIDC3AG031760, gene_TRIDC3BG036360 ... gene_TRIDC4AG037040, gene_TRIDC4BG012470
Poaceae	Triticum aestivum	6	TraesCS3A02G212900.1, TraesCS3B02G243200.1 ... TraesCS3D02G215300.1, TraesCS4A02G235000.1, TraesCS4B02G080000.1, TraesCS4D02G078900.1
Poaceae	Zea mays	2	Zm00001eb219090_P002, Zm00001eb357570_P001
Poaceae	Zoysia japonica	3	nbis-gene-20342, nbis-gene-29348, nbis-gene-33837
Poaceae	Zoysia macrostachya	2	Zma_g8154, Zma_g939
Portulacaceae	Portulaca oleracea	4	evm.TU.LG04.3317, evm.TU.LG05.598, evm.TU.LG16.281 ... evm.TU.LG25.728
Posidoniaceae	Posidonia oceanica	3	gene.Posoc03g22880, gene.Posoc04g06300, gene.Posoc04g23880
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_16_RagTag.128, evm.TU.Scaffold_6_RagTag.1910
Rhizophoraceae	Carallia pectinifolia	1	nbisL1-mrna-17231
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-17123, nbisL1-mrna-4404
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-11877, nbisL1-mrna-20359
Rhizophoraceae	Kandelia candel	2	evm.TU.utg000011l.1164, evm.TU.utg000022l.415
Rhizophoraceae	Kandelia obovata	2	Maker00007694, Maker00014411
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-15530, nbisL1-mrna-3556
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-3182, nbisL1-mrna-6721
Salicaceae	Populus euphratica	4	populus_peu03627, populus_peu14317, populus_peu14325 ... populus_peu23431
Solanaceae	Lycium barbarum	2	gene-LOC132623217, gene-LOC132627001
Solanaceae	Solanum chilense	2	SOLCI003512000, SOLCI006709400
Solanaceae	Solanum pennellii	2	gene-LOC107003157, gene-LOC107008924
Tamaricaceae	Reaumuria soongarica	2	STRG.5432_chr03_+, gene_1316
Tamaricaceae	Tamarix chinensis	2	TC03G2377, TC04G1694
Zosteraceae	Zostera marina	2	Zosma03g03060.v3.1, Zosma05g24970.v3.1