Basic Information
Locus ID:
Ag9G02767
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Angio-associated migratory cell
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 288300125 | 288306067 | - | Ag9G02767 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.35 | 42,257.92 Da | 38.29 | 81.17 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 96 | 386 | 7.64992E-76 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 218 | 256 | 4.0E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 97 | 129 | 1.2E-8 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 351 | 385 | 2.4E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 178 | 213 | 1.1E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 138 | 171 | 0.0039 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 263 | 306 | 8.9E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 50 | 82 | 0.14 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 317 | 347 | 8.2E-7 | IPR001680 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 47 | 351 | 9.42E-68 | IPR011047 |
| Gene3D | G3DSA:2.130.10.10 | - | 14 | 175 | 8.4E-36 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 176 | 285 | 4.9E-31 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 286 | 390 | 2.2E-26 | IPR015943 |
| SMART | SM00320 | WD40_4 | 174 | 213 | 1.5E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 261 | 306 | 1.6E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 350 | 389 | 2.2E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 132 | 171 | 6.2E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 47 | 87 | 0.0013 | IPR001680 |
| SMART | SM00320 | WD40_4 | 216 | 258 | 3.9E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 90 | 129 | 3.4E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 309 | 347 | 6.9E-9 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 139 | 171 | 8.781968 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 97 | 138 | 18.528818 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 181 | 213 | 12.604675 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 357 | 394 | 8.729241 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 315 | 356 | 13.148488 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 226 | 267 | 10.307941 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 181 | 222 | 16.289801 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 357 | 389 | 8.703868 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 97 | 132 | 14.792847 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 315 | 347 | 10.126507 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 139 | 180 | 11.009724 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 116 | 130 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 293 | 307 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 116 | 130 | 1.5E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 200 | 214 | 1.5E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 334 | 348 | 1.5E-7 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G71840.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_017230986.1 | PREDICTED: angio-associated migratory cell protein-like [Daucus carota subsp. sativus] | 0 |
| P38123 | COMPASS component SWD3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=SWD3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A103YDS8 | G-protein beta WD-40 repeat-containing protein OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_014389 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 74.675087 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 48.387123 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 51.515934 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 50.165638 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 49.92004 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 61.132454 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 64.156166 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 63.096859 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 37.299797 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 36.18222 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 34.757469 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 40.603008 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 36.971088 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 42.628338 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 26.017811 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 25.971802 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 31.37361 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 34.447273 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 37.869469 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 34.887161 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 42.461006 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 39.692421 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 39.189342 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 39.038353 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 36.789536 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 39.412148 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 34.709492 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 43.424671 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 38.481926 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 98.890038 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 76.786018 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 76.755722 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 81.706451 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 62.338577 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 64.172935 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 84.087448 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 72.573677 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 80.209526 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 32.455807 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 23.810431 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 24.054136 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 24.759243 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 39.423107 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 105.927513 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 66.132256 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 25.882875 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 53.442257 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 41.931507 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 39.160797 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 43.629578 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg27415 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_13286, gene_21422 |
| Amaranthaceae | Beta vulgaris | 3 | BVRB_5g115000, BVRB_6g133260, BVRB_9g219050 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg13377, Sbi_jg52470 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg9371 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00013388 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl71153, Sgl71718, Sgl74735, Sgl75289 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000001851, gene:ENSEOMG00000005094 ... |
| Amaranthaceae | Chenopodium quinoa | 5 | CQ.Regalona.r1.2BG0002820, CQ.Regalona.r1.2BG0002830 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30037180, pistato.v30037340 |
| Apiaceae | Apium graveolens | 2 | Ag7G00170, Ag9G02767 |
| Arecaceae | Cocos nucifera | 1 | scaffold003116G000040 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103711604 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_09.196.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G07047 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G71840.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10018505m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp5g26870.v2.2, SpUn0020_0100.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB03g040040.2N, BniB03g049660.2N, BniB05g069130.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq03G1527, Ceq03G1529 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl03G1663, Cgl03G1664 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g01230 |
| Dunaliellaceae | Dunaliella salina | 3 | Dusal.1815s00001.v1.0, Dusal.2803s00002.v1.0 ... |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate01g06910, gene.Thate01g09720 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00007051, Pov_00030628 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb0G38178, Lb2G14336, Lb3G20589 |
| Poaceae | Echinochloa crus-galli | 3 | AH08.2297, BH08.2437, CH09.2433 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0108500, gene-QOZ80_6BG0463510 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0116380.1, HORVU.MOREX.r3.3HG0230460.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_007844, gene-QYE76_034974, gene-QYE76_067822 |
| Poaceae | Oryza coarctata | 3 | Oco05G020450, Oco06G021210, Oco16G012050 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g48090.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G130100 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0204816, Pt_Chr0305097, Pt_Chr0604863 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr03G024010, Chr06G008860, Chr08G017490, Chr15G010410 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel1E01G582900, Tel2E01G264500 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC1AG052710, gene_TRIDC1BG060340 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS1A02G358200.1, TraesCS1B02G374800.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb139680_P001, Zm00001eb362180_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-28048, nbis-gene-42254 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g12025, Zma_g28009 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG07.340, evm.TU.LG15.608 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g02540 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_8_RagTag.452 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-9802 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-2261 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-18040 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000018l.705 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00003159 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-9580 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-18708 |
| Salicaceae | Populus euphratica | 3 | populus_peu16674, populus_peu16680, populus_peu18837 |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132603144, gene-LOC132603240, gene-LOC132603241 |
| Solanaceae | Solanum chilense | 1 | SOLCI003135100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107024210 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_14874 |
| Tamaricaceae | Tamarix chinensis | 1 | TC09G1221 |
| Zosteraceae | Zostera marina | 1 | Zosma04g00080.v3.1 |