Basic Information
Locus ID:
Ag9G02740
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
ZINC FINGER protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 287939528 | 287942856 | + | Ag9G02740 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.85 | 45,365.65 Da | 48.30 | 63.94 | -0.75 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12756 | C2H2 type zinc-finger (2 copies) | 175 | 276 | 3.0E-25 | IPR041661 |
| Pfam | PF12171 | Zinc-finger double-stranded RNA-binding | 68 | 92 | 3.8E-5 | IPR022755 |
| SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 5 | 36 | 1.37E-5 | IPR036236 |
| SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 63 | 98 | 1.32E-5 | IPR036236 |
| SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 161 | 234 | 3.81E-7 | IPR036236 |
| SMART | SM00355 | c2h2final6 | 4 | 28 | 79.0 | IPR013087 |
| SMART | SM00355 | c2h2final6 | 224 | 251 | 16.0 | IPR013087 |
| SMART | SM00355 | c2h2final6 | 68 | 92 | 0.43 | IPR013087 |
| SMART | SM00355 | c2h2final6 | 173 | 196 | 230.0 | IPR013087 |
| ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 68 | 92 | 8.932892 | IPR013087 |
| ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 70 | 92 | - | IPR013087 |
| ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 6 | 28 | - | IPR013087 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 97 | 163 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 129 | 163 | - | - |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G24500.1 | Zinc finger protein 622. Encodes a C2H2 zinc finger protein FZF. | 0 |
| RefSeq | XP_017230806.1 | PREDICTED: cytoplasmic 60S subunit biogenesis factor REI1 homolog 2-like [Daucus carota subsp. sativus] | 0 |
| Q9ZQ18 | Cytoplasmic 60S subunit biogenesis factor REI1 homolog 2 OS=Arabidopsis thaliana OX=3702 GN=REIL2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A166FNV3 | C2H2-type domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_000669 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 58.908821 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 50.953148 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 49.241962 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 48.074341 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 48.316334 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 54.08099 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 51.997284 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 60.631981 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 60.196175 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 62.372368 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 60.958206 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 74.427597 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 71.313835 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 82.289253 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 31.322376 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 29.527348 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 37.536007 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 39.71751 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 31.604761 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 48.406246 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 51.421486 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 52.490868 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 53.029659 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 52.804848 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 48.584209 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 44.7491 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 40.042984 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 41.738518 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 40.761745 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 57.679977 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 68.599976 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 64.261528 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 84.784279 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 73.140984 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 90.894958 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 54.658783 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 56.538883 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 54.337593 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 37.613815 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 30.25922 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 33.459179 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 112.823135 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 79.657227 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 60.535519 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 61.361977 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 114.330467 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 52.186199 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 57.603687 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 53.546822 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 52.676292 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg23695 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_8046 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah034380 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg20482, Sbi_jg20484, Sbi_jg23290 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg17087 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00009124 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl63545, Sgl68034, Sgl68036 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000018284, gene:ENSEOMG00000019919 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2AG0013370, CQ.Regalona.r1.2BG0015330 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30251950 |
| Apiaceae | Apium graveolens | 1 | Ag9G02740 |
| Arecaceae | Cocos nucifera | 2 | COCNU_01G003650, COCNU_11G012820 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103696939, gene-LOC103696940 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.2457.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri16G14977, Ftri3G03238 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT2G24500.1, AT4G31420.2 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10000189m.g.v1.0, Thhalv10025366m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp4g03510.v2.2, Sp7g29280.v2.2 |
| Brassicaceae | Brassica nigra | 6 | BniB01g019080.2N, BniB01g048220.2N, BniB02g022510.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G2196 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G2394 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno06g06550 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0267s00007.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g15330 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-350 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG07.1606 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00028709 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G12724 |
| Poaceae | Echinochloa crus-galli | 6 | AH06.2811, AH06.2813, BH06.2605, BH06.2606, CH06.2912 ... |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0549220, gene-QOZ80_6BG0502770 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0729500.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_035619, gene-QYE76_048309 |
| Poaceae | Oryza coarctata | 1 | Oco11G015870 |
| Poaceae | Oryza sativa | 2 | LOC_Os06g47840.1, LOC_Os06g47850.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_10G244300, gene-BS78_10G244400 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0401168, Pt_Chr0404185, Pt_Chr0405090 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr02G032350, Chr05G001360, Chr10G021110, Chr11G001510 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G722000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG060240, gene_TRIDC7BG053260 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G432100.1, TraesCS7B02G332300.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb226230_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-40641, nbis-gene-9679 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g31048, Zma_g33306 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG05.2393, evm.TU.LG07.1252 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc01g19980, gene.Posoc03g14800 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_10_RagTag.979 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-13511 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-10847, nbisL1-mrna-8547 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-4317, nbisL1-mrna-9217 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000004l.252 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00003974 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-3689 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-7724, nbisL1-mrna-9682 |
| Salicaceae | Populus euphratica | 2 | populus_peu04592, populus_peu13076 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132604282 |
| Solanaceae | Solanum chilense | 1 | SOLCI001264900 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107005191, gene-LOC107028750 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.7563_chr05_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC11G1518 |
| Zosteraceae | Zostera marina | 2 | Zosma03g00290.v3.1, Zosma03g12290.v3.1 |