Basic Information
Locus ID:
Ag9G02739
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Protein of unknown function (DUF1644)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 287925899 | 287931242 | + | Ag9G02739 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.12 | 32,887.54 Da | 66.70 | 58.65 | -0.83 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07800 | Protein of unknown function (DUF1644) | 11 | 173 | 4.7E-65 | IPR012866 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 2 | 151 | 8.9E-6 | IPR013083 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 240 | 263 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 63 | 86 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 229 | 263 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 63 | 82 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G31410.1 | Protein of unknown function (DUF1644). | 0 |
| RefSeq | XP_017239721.1 | PREDICTED: uncharacterized protein LOC108212489 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A166FNW0 | Transcription factor C2H2 family OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_000670 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 16.885277 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 18.195984 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 16.300638 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 16.7938 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 16.705334 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 20.440363 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 16.515884 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 11.884294 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 26.82213 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 25.524141 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 26.451136 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 26.026964 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 27.231979 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 27.875731 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 17.187004 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 18.80402 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 10.9343 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 21.316454 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 19.561857 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 34.340324 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 34.054024 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 29.211813 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 27.649416 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 21.000063 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 24.346874 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 19.861326 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 19.368391 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 19.520565 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 18.73098 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 14.917229 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 16.660206 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 14.770144 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 28.073977 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 21.559643 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 32.229107 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 19.813328 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 13.535967 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 17.096369 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 19.686661 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 25.81111 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 15.099334 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 41.732784 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 41.562023 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 27.209978 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 26.714088 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 43.483883 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 40.807968 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 24.860056 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 20.649279 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 25.58148 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg23693, jg36863, jg7784 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_13103 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah034379 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g034730 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg20485, Sbi_jg23289 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg17086 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00009125 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl63544, Sgl68033, Sgl68035 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000017589, gene:ENSEOMG00000049991 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2AG0013350, CQ.Regalona.r1.2BG0015320 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30251960 |
| Apiaceae | Apium graveolens | 1 | Ag9G02739 |
| Arecaceae | Cocos nucifera | 2 | COCNU_01G003640, COCNU_01G008490 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103696172 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_05.3488.V1.1, AsparagusV1_07.2860.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri14G27037, Ftri7G16304 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G31410.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10025953m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g29270.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB03g010470.2N, BniB05g006490.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G2197 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G2395 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno03g10090, gene.Cymno06g06570 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate04g11220, gene.Thate05g05860 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG07.1607 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00030604 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G12709 |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_2AG0101730, gene-QOZ80_6AG0549260 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.6HG0560030.1, HORVU.MOREX.r3.7HG0729490.1 |
| Poaceae | Lolium multiflorum | 4 | gene-QYE76_007520, gene-QYE76_020559, gene-QYE76_035620 ... |
| Poaceae | Oryza coarctata | 4 | Oco03G002580, Oco04G002520, Oco11G015880, Oco12G016200 |
| Poaceae | Oryza sativa | 2 | LOC_Os02g05710.1, LOC_Os06g47860.1 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_04G039700, gene-BS78_10G244500, gene-BS78_K250000 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0202710, Pt_Chr0401167 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr02G032370, Chr05G001380, Chr06G034840, Chr10G021120 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel6E01G274500, Tel7E01G721900 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC6AG016080, gene_TRIDC6BG021810 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS6A02G121600.1, TraesCS6B02G149900.1 ... |
| Poaceae | Zea mays | 4 | Zm00001eb207970_P001, Zm00001eb226240_P001 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-29953, nbis-gene-33725 |
| Poaceae | Zoysia macrostachya | 4 | Zma_g12200, Zma_g14957, Zma_g31050, Zma_g33308 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG04.3269, evm.TU.LG16.332 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc02g25190, gene.Posoc03g14810 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_4_RagTag.1484 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-26256 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-8236 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-4318 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000008l.804 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00001553 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-17588 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-9680 |
| Salicaceae | Populus euphratica | 1 | populus_peu13077 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132604283 |
| Solanaceae | Solanum chilense | 1 | SOLCI001264800 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107007471 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_14252 |
| Tamaricaceae | Tamarix chinensis | 1 | TC11G1519 |
| Zosteraceae | Zostera marina | 2 | Zosma05g32710.v3.1, Zosma154g00080.v3.1 |