halophFGD

Basic Information

Locus ID: Ag9G02695

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Src homology 3 domains

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr9	286515800	286521183	-	Ag9G02695

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.68	41,186.91 Da	45.49	77.72	-0.58

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF14604	Variant SH3 domain	299	347	2.5E-9	IPR001452
SUPERFAMILY	SSF103657	BAR/IMD domain-like	43	249	9.42E-23	IPR027267
SUPERFAMILY	SSF50044	SH3-domain	265	351	7.74E-16	IPR036028
Gene3D	G3DSA:2.30.30.40	SH3 Domains	280	360	9.3E-15	-
Gene3D	G3DSA:1.20.1270.60	Arfaptin homology (AH) domain/BAR domain	40	252	4.0E-11	IPR027267
SMART	SM00326	SH3_2	295	350	1.9E-13	IPR001452
ProSiteProfiles	PS50002	Src homology 3 (SH3) domain profile.	292	351	20.287476	IPR001452
Coils	Coil	Coil	145	165	-	-
Coils	Coil	Coil	184	204	-	-
Coils	Coil	Coil	1	21	-	-

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K11247 (endophilin-A)

Best hit

Source	Best Hit ID	Description
TAIR	AT4G34660.1	SH3 domain-containing protein.
RefSeq	XP_017230551.1	PREDICTED: SH3 domain-containing protein 2 isoform X3 [Daucus carota subsp. sativus]
Swiss-Prot	Q8VWF1	SH3 domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=SH3P2 PE=1 SV=1
TrEMBL	A0A161ZQ67	SH3 domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_000705 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	13.230097	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	13.098335	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	15.494761	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	15.123407	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	13.612013	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	12.942949	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	10.320664	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	10.546644	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	20.450193	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	20.541925	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	18.921223	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	15.351978	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	17.930876	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	12.920885	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	41.29361	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	53.149181	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	42.24062	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	29.77906	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	27.415663	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	26.148502	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	28.702978	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	27.170261	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	24.389929	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	24.967625	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	25.353586	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	24.927765	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	27.575609	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	23.922438	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	27.502756	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	4.406246		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	2.835746		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	2.182179		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	3.904176		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	7.945529		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	4.809523		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	3.761931		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	2.814016		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	2.475439		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	6.537382	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	10.01666	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	8.960955	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	22.719513	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	23.685244	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	32.41761	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	26.987562	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	23.675062	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	32.051373	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	40.387569	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	43.153057	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	40.572277	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	4	jg10573, jg23675, jg28802, jg958
Aizoaceae	Mesembryanthemum crystallinum	2	gene_14671, gene_21693
Amaranthaceae	Atriplex hortensis	2	Ah004698, Ah010152
Amaranthaceae	Beta vulgaris	2	BVRB_5g108390, BVRB_9g216600
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg12362, Sbi_jg45977
Amaranthaceae	Salicornia europaea	1	Seu_jg20309
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00005626, GOSA_00010861
Amaranthaceae	Suaeda glauca	5	Sgl52502, Sgl52503, Sgl56203, Sgl57767, Sgl61698
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000006269, gene:ENSEOMG00000014000 ... gene:ENSEOMG00000021582, gene:ENSEOMG00000022949, gene:ENSEOMG00000036857, gene:ENSEOMG00000051416
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.1AG0016560, CQ.Regalona.r1.5AG0000840 ... CQ.Regalona.r1.7BG0006910, CQ.Regalona.r1.9AG0017740
Anacardiaceae	Pistacia vera	1	pistato.v30115530
Apiaceae	Apium graveolens	5	Ag3G02502, Ag7G01217, Ag8G02039, Ag9G00012, Ag9G02695
Arecaceae	Cocos nucifera	5	COCNU_07G015570, COCNU_10G004570, COCNU_10G009660 ... scaffold006747G000010, scaffold030283G000020
Arecaceae	Phoenix dactylifera	4	gene-LOC103708484, gene-LOC103712197, gene-LOC103716668 ... gene-LOC103718969
Asparagaceae	Asparagus officinalis	3	AsparagusV1_04.1063.V1.1, AsparagusV1_04.3578.V1.1 ... AsparagusV1_08.7.V1.1
Asteraceae	Flaveria trinervia	3	Ftri10G18432, Ftri13G07504, Ftri3G25762
Brassicaceae	Arabidopsis thaliana	2	AT1G31440.1, AT4G34660.1
Brassicaceae	Eutrema salsugineum	3	Thhalv10007690m.g.v1.0, Thhalv10025489m.g.v1.0 ... Thhalv10025594m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp1g27240.v2.2, Sp7g32450.v2.2, Sp7g36810.v2.2
Brassicaceae	Brassica nigra	5	BniB03g015470.2N, BniB03g020770.2N, BniB04g047260.2N ... BniB05g003650.2N, BniB07g019180.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq01G0728, Ceq07G1502
Casuarinaceae	Casuarina glauca	4	Cgl01G0326, Cgl01G0347, Cgl01G0903, Cgl07G1581
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno10g07270, gene.Cymno18g04880
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate02g06050, gene.Thate04g13470, gene.Thate08g20500
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-9451
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG05.950, evm.TU.LG08.209
Plantaginaceae	Plantago ovata	2	Pov_00028637, Pov_00035860
Plumbaginaceae	Limonium bicolor	3	Lb1G04944, Lb2G13505, Lb2G14218
Poaceae	Echinochloa crus-galli	6	AH01.1601, AH01.4234, BH01.1797, BH01.4538, CH01.1889 ... CH09.2080
Poaceae	Eleusine coracana subsp. coracana	6	gene-QOZ80_2AG0113660, gene-QOZ80_2BG0166820 ... gene-QOZ80_3AG0242310, gene-QOZ80_3BG0285840, gene-QOZ80_4AG0308990, gene-QOZ80_4BG0340010
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.1HG0049610.1, HORVU.MOREX.r3.2HG0184890.1 ... HORVU.MOREX.r3.4HG0389410.1
Poaceae	Lolium multiflorum	2	gene-QYE76_012039, gene-QYE76_069087
Poaceae	Oryza coarctata	6	Oco05G009130, Oco06G009480, Oco07G011840, Oco08G011520 ... Oco19G007940, Oco20G007770
Poaceae	Oryza sativa	3	LOC_Os03g16000.1, LOC_Os04g45670.1, LOC_Os10g36870.1
Poaceae	Paspalum vaginatum	3	gene-BS78_01G178200, gene-BS78_01G406000 ... gene-BS78_06G173700
Poaceae	Puccinellia tenuiflora	4	Pt_Chr0102216, Pt_Chr0102237, Pt_Chr0201617, Pt_Chr0502878
Poaceae	Sporobolus alterniflorus	9	Chr04G007410, Chr06G029520, Chr07G004230, Chr12G008960 ... Chr15G020780, Chr23G007710, Chr25G006370, Chr26G012040, Chr30G006170
Poaceae	Thinopyrum elongatum	3	Tel1E01G318400, Tel2E01G666700, Tel4E01G372700
Poaceae	Triticum dicoccoides	6	gene_TRIDC1AG027150, gene_TRIDC1BG033820 ... gene_TRIDC2AG055920, gene_TRIDC2BG058810, gene_TRIDC4AG012550, gene_TRIDC4BG037740
Poaceae	Triticum aestivum	9	TraesCS1A02G177700.1, TraesCS1B02G202500.1 ... TraesCS1D02G176200.1, TraesCS2A02G388400.1, TraesCS2B02G406500.2, TraesCS2D02G386200.1, TraesCS4A02G092400.1, TraesCS4B02G211900.1, TraesCS4D02G212700.1
Poaceae	Zea mays	5	Zm00001eb011910_P001, Zm00001eb043690_P001 ... Zm00001eb075310_P001, Zm00001eb220370_P001, Zm00001eb427590_P002
Poaceae	Zoysia japonica	5	nbis-gene-2138, nbis-gene-34380, nbis-gene-3797 ... nbis-gene-45425, nbis-gene-5403
Poaceae	Zoysia macrostachya	5	Zma_g15510, Zma_g1564, Zma_g20147, Zma_g21703, Zma_g3958
Portulacaceae	Portulaca oleracea	6	evm.TU.LG02.311, evm.TU.LG04.2919, evm.TU.LG08.1430 ... evm.TU.LG09.1545, evm.TU.LG16.695, evm.TU.LG22.326
Posidoniaceae	Posidonia oceanica	2	gene.Posoc06g13140, gene.Posoc07g02150
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_14_RagTag.736, evm.TU.Scaffold_1_RagTag.2225 ... evm.TU.Scaffold_2_RagTag.166
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-17696, nbisL1-mrna-24848, nbisL1-mrna-5042
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-13000, nbisL1-mrna-3615, nbisL1-mrna-9942
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-17081, nbisL1-mrna-3323, nbisL1-mrna-9416
Rhizophoraceae	Kandelia candel	3	evm.TU.utg000007l.27, evm.TU.utg000009l.1134 ... evm.TU.utg000016l.136
Rhizophoraceae	Kandelia obovata	3	Maker00005332, Maker00016004, Maker00016745
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-14171, nbisL1-mrna-15841, nbisL1-mrna-4695
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-14145, nbisL1-mrna-21084, nbisL1-mrna-9024
Salicaceae	Populus euphratica	4	populus_peu03315, populus_peu08816, populus_peu36543 ... populus_peu38040
Solanaceae	Lycium barbarum	6	gene-LOC132599224, gene-LOC132618301, gene-LOC132627248 ... gene-LOC132628910, gene-LOC132635513, gene-LOC132637261
Solanaceae	Solanum chilense	3	SOLCI002772300, SOLCI004158400, SOLCI006056800
Solanaceae	Solanum pennellii	3	gene-LOC107008510, gene-LOC107024051, gene-LOC107026685
Tamaricaceae	Reaumuria soongarica	3	gene_14825, gene_17790, gene_7846
Tamaricaceae	Tamarix chinensis	3	TC01G4622, TC10G0417, TC12G0978
Zosteraceae	Zostera marina	3	Zosma01g31190.v3.1, Zosma03g26250.v3.1, Zosma05g30410.v3.1