Basic Information
Locus ID:
Ag9G02679
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
f-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 286131983 | 286136099 | + | Ag9G02679 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.92 | 39,720.31 Da | 55.86 | 67.21 | -0.67 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12937 | F-box-like | 105 | 148 | 1.0E-10 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 93 | 172 | 3.14E-19 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 88 | 198 | 1.8E-15 | - |
| SMART | SM00256 | fbox_2 | 106 | 146 | 5.3E-6 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 100 | 146 | 13.763068 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 25 | 59 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 25 | 53 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G45360.1 | F-box family protein. | 0 |
| RefSeq | XP_017243528.1 | PREDICTED: F-box protein SKIP31-like [Daucus carota subsp. sativus] | 0 |
| Q9FHK0 | F-box protein SKIP31 OS=Arabidopsis thaliana OX=3702 GN=SKIP31 PE=1 SV=1 | 0 | |
| TrEMBL | A0A166FQ88 | F-box domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_000721 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 13.211248 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 12.152012 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 12.238548 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 11.371171 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 14.780059 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 19.784992 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 12.35084 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 11.764168 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 16.606419 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 18.694212 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 16.762968 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 18.500168 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 18.984133 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 20.974033 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 8.095042 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 6.655473 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 11.954201 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 10.973473 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 13.167734 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 7.977056 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 10.183352 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 14.202352 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 13.193131 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 15.619159 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 14.265878 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 12.175247 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 11.746347 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 12.270415 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 12.611958 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 10.902298 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 12.847856 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 10.728683 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 9.062708 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 15.574633 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 8.286903 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 7.713995 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 6.351554 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 7.088867 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 8.461138 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 9.020988 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 14.099092 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 14.000499 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 12.803875 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 21.178541 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 26.560293 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 12.042698 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 23.709076 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 25.086601 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 33.007565 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 34.919952 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg23652, jg23653, jg36936 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_14656 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah003464 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g102400 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg4685, Sbi_jg7387 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg12637 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00001382 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl51749, Sgl57055 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000006630, gene:ENSEOMG00000021568 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0009590, CQ.Regalona.r1.5BG0010000 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30195730, pistato.v30195930 |
| Apiaceae | Apium graveolens | 2 | Ag7G00247, Ag9G02679 |
| Arecaceae | Cocos nucifera | 1 | COCNU_07G010920 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103703108, gene-LOC103718560 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.61.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri16G22197 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G45360.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10000968m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g10310.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g062390.2N, BniB04g016350.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G0067 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl01G0015 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno08g08960 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0105s00013.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g07290 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-11433 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.77 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00030699 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G08926 |
| Poaceae | Echinochloa crus-galli | 3 | AH06.2941, BH06.2727, CH06.3060 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0550370, gene-QOZ80_6BG0503930 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0725670.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_035351, gene-QYE76_035735 |
| Poaceae | Oryza coarctata | 2 | Oco11G016930, Oco12G017130 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g49530.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G272700 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0400973 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr02G033070, Chr05G000790 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G674000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG056930, gene_TRIDC7BG049360 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G408600.1, TraesCS7B02G308300.4 ... |
| Poaceae | Zea mays | 1 | Zm00001eb227600_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-40735 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g33381 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG05.1450, evm.TU.LG10.530, evm.TU.LG17.538 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc07g00110 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.46384.1, evm.TU.Scaffold_14_RagTag.690 ... |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-17648 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-734 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-17049 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000007l.5 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00016003 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-15823 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-9047 |
| Salicaceae | Populus euphratica | 1 | populus_peu08147 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132635464 |
| Solanaceae | Solanum chilense | 1 | SOLCI006126400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107028423 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_4001 |
| Tamaricaceae | Tamarix chinensis | 1 | TC06G2620 |
| Zosteraceae | Zostera marina | 1 | Zosma06g01100.v3.1 |