halophFGD

Basic Information

Locus ID: Ag9G02671

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Vacuolar protein sorting-associated protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr9	285934184	285981976	-	Ag9G02671

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.78	489,166.13 Da	44.87	90.85	-0.21

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd00821	PH	804	903	4.57422E-4	-
Pfam	PF16910	Repeating coiled region of VPS13	561	782	1.5E-33	IPR031642
Pfam	PF06101	Vacuolar protein sorting-associated protein 62	2246	2395	2.1E-10	IPR009291
Pfam	PF06101	Vacuolar protein sorting-associated protein 62	4242	4322	4.5E-7	IPR009291
Pfam	PF06101	Vacuolar protein sorting-associated protein 62	2013	2159	2.6E-10	IPR009291
Pfam	PF00169	PH domain	803	911	6.2E-7	IPR001849
Pfam	PF16908	Vacuolar sorting-associated protein 13, N-terminal	133	374	3.2E-66	IPR031646
Pfam	PF06650	SHR-binding domain of vacuolar-sorting associated protein 13	3352	3520	1.1E-10	IPR009543
Pfam	PF12624	N-terminal region of Chorein or VPS13	2	107	7.4E-30	IPR026854
SUPERFAMILY	SSF50729	PH domain-like	791	929	1.14E-10	-
Gene3D	G3DSA:2.30.29.30	-	785	911	1.2E-7	IPR011993
SMART	SM00233	PH_update	801	914	8.3E-9	IPR001849
SMART	SM00694	dysfc	2965	3002	7.9E-4	IPR006614
ProSiteProfiles	PS50003	PH domain profile.	800	912	10.6002	IPR001849
MobiDBLite	mobidb-lite	consensus disorder prediction	2215	2234	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	2214	2234	-	-

Gene Ontology

Cellular Component:

GO:0016020 (membrane)

KEGG Pathway

KO Term:

K19525 (vacuolar protein sorting-associated protein 13A/C)

Best hit

Source	Best Hit ID	Description
TAIR	AT4G17140.3	pleckstrin homology (PH) domain-containing protein.
RefSeq	XP_017215672.1	PREDICTED: uncharacterized protein LOC108193497 [Daucus carota subsp. sativus]
Swiss-Prot	Q54LB8	Intermembrane lipid transfer protein vps13A OS=Dictyostelium discoideum OX=44689 GN=vps13A PE=2 SV=1
TrEMBL	A0A166FQH1	PH domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_000729 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	14.60214	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	13.873912	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	17.094282	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	19.681019	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	23.433722	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	35.332005	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	27.009926	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	38.183041	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	24.984629	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	19.058065	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	21.697929	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	18.839846	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	28.606203	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	16.189814	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	7.715372	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	8.675092	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	7.720135	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	14.099918	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	8.233374	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	11.397008	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	17.4543	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	10.335438	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	12.229271	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	9.242176	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	9.847879	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	16.259863	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	9.939023	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	10.337458	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	14.028219	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	1.98812		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	2.629589		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	1.864005		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	6.01143		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	3.647848		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	3.956501		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	3.292793		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	1.86205		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	1.993475		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	8.029159	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	5.552535	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	3.649014	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	11.104163	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	14.900105	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	22.620176	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	21.181591	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	9.108003	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	22.21402	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	9.611477	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	11.597137	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	9.61921	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	2	jg12330, jg4926
Aizoaceae	Mesembryanthemum crystallinum	2	gene_2063, gene_23954
Amaranthaceae	Atriplex hortensis	2	Ah004167, Ah027417
Amaranthaceae	Beta vulgaris	2	BVRB_5g105600, BVRB_6g127200
Amaranthaceae	Salicornia bigelovii	5	Sbi_jg13055, Sbi_jg13063, Sbi_jg24399, Sbi_jg52823 ... Sbi_jg8239
Amaranthaceae	Salicornia europaea	3	Seu_jg11784, Seu_jg9052, Seu_jg9057
Amaranthaceae	Suaeda aralocaspica	5	GOSA_00001576, GOSA_00001577, GOSA_00010197, GOSA_00010198 ... GOSA_00010199
Amaranthaceae	Suaeda glauca	6	Sgl33911, Sgl39277, Sgl39278, Sgl39297, Sgl51524, Sgl56809
Amaranthaceae	Chenopodium album	7	gene:ENSEOMG00000000302, gene:ENSEOMG00000004278 ... gene:ENSEOMG00000021558, gene:ENSEOMG00000022325, gene:ENSEOMG00000023727, gene:ENSEOMG00000024108, gene:ENSEOMG00000025117
Amaranthaceae	Chenopodium quinoa	5	CQ.Regalona.r1.5AG0003370, CQ.Regalona.r1.5BG0003540 ... CQ.Regalona.r1.5BG0003560, CQ.Regalona.r1.6AG0025300, CQ.Regalona.r1.6BG0026820
Anacardiaceae	Pistacia vera	13	pistato.v30105180, pistato.v30109730, pistato.v30141550 ... pistato.v30141570, pistato.v30158950, pistato.v30232060, pistato.v30232520, pistato.v30268500, pistato.v30268560, pistato.v30268590, pistato.v30292870, pistato.v30292900, pistato.v30292910
Apiaceae	Apium graveolens	3	Ag5G01766, Ag8G01809, Ag9G02671
Arecaceae	Cocos nucifera	4	COCNU_02G015330, COCNU_02G015340, COCNU_04G006790 ... COCNU_07G004500
Arecaceae	Phoenix dactylifera	2	gene-LOC103710761, gene-LOC103722332
Asparagaceae	Asparagus officinalis	4	AsparagusV1_04.3126.V1.1, AsparagusV1_04.3127.V1.1 ... AsparagusV1_06.1654.V1.1, AsparagusV1_06.1655.V1.1
Asteraceae	Flaveria trinervia	5	Ftri11G02195, Ftri11G04819, Ftri11G17855, Ftri12G01658 ... Ftri13G32263
Brassicaceae	Arabidopsis thaliana	2	AT1G48090.1, AT4G17140.3
Brassicaceae	Eutrema salsugineum	2	Thhalv10011170m.g.v1.0, Thhalv10024176m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp1g35040.v2.2, Sp7g17050.v2.2
Brassicaceae	Brassica nigra	3	BniB04g063010.2N, BniB07g008110.2N, BniB07g022580.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq01G0781, Ceq09G1400
Casuarinaceae	Casuarina glauca	2	Cgl01G0576, Cgl09G1491
Cymodoceaceae	Cymodocea nodosa	3	gene.Cymno05g03120, gene.Cymno05g03130, gene.Cymno15g04190
Dunaliellaceae	Dunaliella salina	4	Dusal.0367s00014.v1.0, Dusal.0595s00004.v1.0 ... Dusal.0595s00006.v1.0, Dusal.0595s00012.v1.0
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate02g04270, gene.Thate09g09280
Nitrariaceae	Nitraria sibirica	5	evm.TU.LG04.1352, evm.TU.LG05.1284, evm.TU.LG05.1285 ... evm.TU.LG10.1088, evm.TU.LG11.1133
Plantaginaceae	Plantago ovata	2	Pov_00004103, Pov_00026323
Plumbaginaceae	Limonium bicolor	3	Lb4G25461, Lb5G26647, Lb5G26649
Poaceae	Echinochloa crus-galli	5	AH07.1402, AH07.1403, BH01.3196, BH07.1715, CH01.3434
Poaceae	Eleusine coracana subsp. coracana	5	gene-QOZ80_2AG0117140, gene-QOZ80_2AG0130600 ... gene-QOZ80_2AG0130610, gene-QOZ80_2BG0170820, gene-QOZ80_2BG0185880
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.1HG0057310.1, HORVU.MOREX.r3.6HG0586400.1
Poaceae	Lolium multiflorum	3	gene-QYE76_012786, gene-QYE76_022497, gene-QYE76_022498
Poaceae	Oryza coarctata	4	Oco03G010000, Oco04G010290, Oco19G010510, Oco20G010330
Poaceae	Oryza sativa	3	LOC_Os02g27110.1, LOC_Os02g27130.1, LOC_Os10g41560.1
Poaceae	Paspalum vaginatum	2	gene-BS78_01G281500, gene-BS78_K256200
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0503243, Pt_Chr0503285
Poaceae	Sporobolus alterniflorus	6	Chr09G005380, Chr09G005390, Chr09G005400, Chr09G011870 ... Chr13G013420, Chr13G019470
Poaceae	Thinopyrum elongatum	2	Tel1E01G366500, Tel6E01G403600
Poaceae	Triticum dicoccoides	4	gene_TRIDC1AG032550, gene_TRIDC1BG037840 ... gene_TRIDC6AG029640, gene_TRIDC6BG036710
Poaceae	Triticum aestivum	6	TraesCS1A02G215400.1, TraesCS1B02G228900.2 ... TraesCS1D02G217900.1, TraesCS6A02G197400.1, TraesCS6B02G224600.1, TraesCS6D02G182900.1
Poaceae	Zea mays	3	Zm00001eb203070_P001, Zm00001eb203090_P001 ... Zm00001eb390790_P001
Poaceae	Zoysia japonica	1	nbis-gene-19044
Poaceae	Zoysia macrostachya	1	Zma_g16310
Portulacaceae	Portulaca oleracea	7	evm.TU.LG04.1034, evm.TU.LG04.3109, evm.TU.LG05.1581 ... evm.TU.LG10.774, evm.TU.LG10.816, evm.TU.LG13.1361, evm.TU.LG17.809
Posidoniaceae	Posidonia oceanica	2	gene.Posoc01g06700, gene.Posoc07g05800
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_16_RagTag.406, evm.TU.Scaffold_3_RagTag.693
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-1277, nbisL1-mrna-1278, nbisL1-mrna-22664
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-14556, nbisL1-mrna-18468, nbisL1-mrna-2792
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-20139, nbisL1-mrna-20140, nbisL1-mrna-6375
Rhizophoraceae	Kandelia candel	2	evm.TU.utg000019l.797, evm.TU.utg000022l.247
Rhizophoraceae	Kandelia obovata	1	Maker00014320
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-3388, nbisL1-mrna-5261
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-13126, nbisL1-mrna-13127, nbisL1-mrna-6472
Salicaceae	Populus euphratica	3	populus_peu03097, populus_peu06847, populus_peu20746
Solanaceae	Lycium barbarum	2	gene-LOC132629881, gene-LOC132635217
Solanaceae	Solanum chilense	4	SOLCI005817700, SOLCI005817800, SOLCI006490500 ... SOLCI006490600
Solanaceae	Solanum pennellii	2	gene-LOC107028368, gene-LOC107031055
Tamaricaceae	Reaumuria soongarica	2	gene_14035, gene_8139
Tamaricaceae	Tamarix chinensis	2	TC01G3724, TC10G1108
Zosteraceae	Zostera marina	3	Zosma01g34280.v3.1, Zosma02g14760.v3.1, Zosma03g15620.v3.1