Basic Information
Locus ID:
Ag9G02664
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Short Name:
UBP22
Description:
Ubiquitinyl hydrolase 1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 285773877 | 285777256 | + | Ag9G02664 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.19 | 63,060.45 Da | 52.45 | 75.31 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02660 | Peptidase_C19D | 183 | 524 | 2.97839E-142 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 183 | 523 | 2.5E-52 | IPR001394 |
| Pfam | PF02148 | Zn-finger in ubiquitin-hydrolases and other protein | 56 | 120 | 1.5E-11 | IPR001607 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 179 | 525 | 5.49E-90 | IPR038765 |
| SUPERFAMILY | SSF57850 | RING/U-box | 13 | 123 | 5.77E-15 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 9 | 129 | 9.3E-19 | IPR013083 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 178 | 529 | 5.1E-99 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 183 | 526 | 55.381435 | IPR028889 |
| ProSiteProfiles | PS50271 | Zinc finger UBP-type profile. | 54 | 118 | 14.064846 | IPR001607 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 184 | 199 | - | IPR018200 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G10790.1 | ubiquitin-specific protease 22. Encodes a ubiquitin-specific protease. | 0 |
| RefSeq | XP_017225763.1 | PREDICTED: ubiquitin carboxyl-terminal hydrolase 22 [Daucus carota subsp. sativus] | 0 |
| Q9LEW0 | Ubiquitin C-terminal hydrolase 22 OS=Arabidopsis thaliana OX=3702 GN=UBP22 PE=1 SV=1 | 0 | |
| TrEMBL | A0A166FQL2 | ubiquitinyl hydrolase 1 OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_000731 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 19.161013 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 16.123562 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 14.509521 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 16.23196 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 15.798871 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 12.87232 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 12.669242 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 16.039103 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 23.217442 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 24.006979 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 27.946301 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 26.023603 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 26.222963 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 20.223892 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 13.213095 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 13.539322 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 15.528794 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 14.134084 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 13.328802 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 14.114614 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 19.05674 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 20.355331 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 22.215565 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 19.069195 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 21.040617 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 18.918467 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 15.802142 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 14.925344 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 19.198172 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 4.912512 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 9.499063 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 9.180074 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 9.78165 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 11.653301 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 9.079649 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 8.903845 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 5.166007 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 7.842811 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 12.293095 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 13.357772 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 7.384117 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 15.974775 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 17.256714 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 28.972509 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 27.52368 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 14.887605 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 25.534309 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 17.506748 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 21.048424 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 21.323578 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg33031, jg7808 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_10597 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah031799 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g044210 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg25566, Sbi_jg9386 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg19226 |
| Amaranthaceae | Suaeda aralocaspica | 3 | GOSA_00011038, GOSA_00011039, GOSA_00014565 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl41930, Sgl42021, Sgl46724 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000015113, gene:ENSEOMG00000018580 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2AG0001140, CQ.Regalona.r1.2BG0002210 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30251170, pistato.v30261670 |
| Apiaceae | Apium graveolens | 2 | Ag3G02744, Ag9G02664 |
| Arecaceae | Cocos nucifera | 5 | COCNU_01G010400, COCNU_01G018110, COCNU_11G000590 ... |
| Arecaceae | Phoenix dactylifera | 5 | gene-LOC103707255, gene-LOC103710115, gene-LOC103711475 ... |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_03.3130.V1.1, AsparagusV1_05.3426.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri13G22440, Ftri15G24350 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G10790.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10013142m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g32670.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB05g026430.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq04G2476, Ceq06G1407 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl04G2702, Cgl06G1469 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno03g03540, gene.Cymno06g07400 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0452s00007.v1.0, Dusal.0452s00008.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate03g08360, gene.Thate04g10350 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG07.1546 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00001113 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb1G00032, Lb4G25134, Lb6G32028 |
| Poaceae | Echinochloa crus-galli | 3 | AH09.2496, BH09.2718, CH09.2914 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0301730, gene-QOZ80_4BG0332480 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0205200.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_046756 |
| Poaceae | Oryza coarctata | 2 | Oco07G017450, Oco08G016840 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g55360.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_06G250100, gene-BS78_06G257500 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0300725, Pt_Chr0300779 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr23G002490, Chr26G016850 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G876100 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG072460, gene_TRIDC2BG078660 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G516100.1, TraesCS2B02G544700.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb068590_P002, Zm00001eb080880_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-23010, nbis-gene-23011 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g20552 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.2571, evm.TU.LG17.1613 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc02g04370, gene.Posoc03g13430 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_10_RagTag.83, evm.TU.Scaffold_10_RagTag.918 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-12904, nbisL1-mrna-13560 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-10803, nbisL1-mrna-19082 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-9167 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000004l.219, evm.TU.utg000033l.56 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00004109, Maker00015172 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-16719, nbisL1-mrna-3721 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-7794 |
| Salicaceae | Populus euphratica | 3 | populus_peu04667, populus_peu05701, populus_peu13019 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132603113, gene-LOC132635621 |
| Solanaceae | Solanum chilense | 2 | SOLCI000349300, SOLCI003605400 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107026229, gene-LOC107027053 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.12239_chr02_+, gene_7245 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G1011 |
| Zosteraceae | Zostera marina | 1 | Zosma01g32530.v3.1 |