halophFGD

Basic Information

Locus ID: Ag9G02626

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr9	284641847	284645244	-	Ag9G02626

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.97	114,031.07 Da	33.84	102.49	-0.05

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00560	Leucine Rich Repeat	293	315	0.58	IPR001611
Pfam	PF00069	Protein kinase domain	696	975	6.7E-47	IPR000719
Pfam	PF13855	Leucine rich repeat	530	589	5.4E-7	IPR001611
Pfam	PF08263	Leucine rich repeat N-terminal domain	38	72	5.1E-6	IPR013210
Pfam	PF13855	Leucine rich repeat	101	160	4.2E-11	IPR001611
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	686	979	4.18E-75	IPR011009
SUPERFAMILY	SSF52058	L domain-like	374	599	2.55E-37	-
SUPERFAMILY	SSF52047	RNI-like	81	434	1.33E-63	-
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	35	187	1.0E-39	IPR032675
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	290	386	2.3E-25	IPR032675
Gene3D	G3DSA:3.30.200.20	Phosphorylase Kinase; domain 1	677	773	1.3E-18	-
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	387	632	5.3E-54	IPR032675
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	188	289	5.8E-27	IPR032675
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	774	990	7.4E-63	-
SMART	SM00369	LRR_typ_2	315	339	78.0	IPR003591
SMART	SM00369	LRR_typ_2	292	314	310.0	IPR003591
SMART	SM00369	LRR_typ_2	553	577	230.0	IPR003591
SMART	SM00369	LRR_typ_2	244	268	2.2	IPR003591
SMART	SM00220	serkin_6	694	979	2.8E-29	IPR000719
SMART	SM00369	LRR_typ_2	505	528	120.0	IPR003591
SMART	SM00369	LRR_typ_2	147	171	170.0	IPR003591
SMART	SM00369	LRR_typ_2	195	220	130.0	IPR003591
ProSiteProfiles	PS51450	Leucine-rich repeat profile.	246	268	7.581043	IPR001611
ProSiteProfiles	PS51450	Leucine-rich repeat profile.	293	315	7.065096	IPR001611
ProSiteProfiles	PS50011	Protein kinase domain profile.	694	979	37.007771	IPR000719
ProSitePatterns	PS00107	Protein kinases ATP-binding region signature.	700	723	-	IPR017441
ProSitePatterns	PS00108	Serine/Threonine protein kinases active-site signature.	828	840	-	IPR008271

Gene Ontology

Biological Process:

GO:0006468 (protein phosphorylation)

Molecular Function:

GO:0004672 (protein kinase activity) GO:0005515 (protein binding) GO:0005524 (ATP binding)

KEGG Pathway

KO Term:

K00924 (receptor protein kinase TMK [EC:2.7.11.1])

Best hit

Source	Best Hit ID	Description
TAIR	AT5G25930.1	Protein kinase family protein with leucine-rich repeat domain.
RefSeq	XP_017226186.1	PREDICTED: receptor-like protein kinase HSL1 [Daucus carota subsp. sativus]
Swiss-Prot	P47735	Receptor-like protein kinase 5 OS=Arabidopsis thaliana OX=3702 GN=RLK5 PE=1 SV=1
TrEMBL	A0A161ZSW6	Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_000765 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	0.125987	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	0.08507	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	0.071605	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	0.114813	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	0.118584	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	0.173265	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	0	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	0	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	1.724985	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	1.618678	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	2.147228	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	1.494896	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	1.070827	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	0.798136	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	0	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	0.308537	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	0.373197	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	0.543295	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	0.525868	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	1.246075	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	0.961048	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	1.645691	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	2.085437	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	2.394014	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	2.002673	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	0.683928	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	1.369026	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	1.022158	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	0.756851	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0.039353		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	0.154991		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	0.504996		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	0.317409		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	0.542589		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0.290936		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	0.482024		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	0.565764	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	0.126682	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	0.034141	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	12.349169	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	0.914124	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	0.166011	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	0.963423	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	10.469767	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	0.668017	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	0.872835	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	0.842847	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	0.849836	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	6	jg23899, jg23902, jg23903, jg31658, jg32970, jg4549
Aizoaceae	Mesembryanthemum crystallinum	16	gene_12923, gene_12924, gene_13201, gene_13202, gene_13203 ... gene_13204, gene_13223, gene_13224, gene_13225, gene_8122, gene_8123, gene_8124, gene_8125, gene_8126, gene_8127, gene_8128
Amaranthaceae	Atriplex hortensis	3	Ah035058, Ah035062, Ah035064
Amaranthaceae	Beta vulgaris	4	BVRB_2g032780, BVRB_2g032790, BVRB_2g032800, BVRB_2g032810
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg20913, Sbi_jg22871
Amaranthaceae	Salicornia europaea	1	Seu_jg16733
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00018166
Amaranthaceae	Suaeda glauca	2	Sgl62289, Sgl66836
Amaranthaceae	Chenopodium album	8	gene:ENSEOMG00000018127, gene:ENSEOMG00000018775 ... gene:ENSEOMG00000019088, gene:ENSEOMG00000019717, gene:ENSEOMG00000020085, gene:ENSEOMG00000047937, gene:ENSEOMG00000049253, gene:ENSEOMG00000051765
Amaranthaceae	Chenopodium quinoa	7	CQ.Regalona.r1.2AG0015020, CQ.Regalona.r1.2AG0015040 ... CQ.Regalona.r1.2AG0015050, CQ.Regalona.r1.2BG0017130, CQ.Regalona.r1.2BG0017140, CQ.Regalona.r1.2BG0017150, CQ.Regalona.r1.2BG0017160
Anacardiaceae	Pistacia vera	12	pistato.v30168210, pistato.v30168230, pistato.v30254050 ... pistato.v30254070, pistato.v30254100, pistato.v30254130, pistato.v30257250, pistato.v30257260, pistato.v30257300, pistato.v30257330, pistato.v30257340, pistato.v30257350
Apiaceae	Apium graveolens	5	Ag7G00332, Ag7G01921, Ag8G00329, Ag9G01447, Ag9G02626
Arecaceae	Cocos nucifera	6	COCNU_02G001660, COCNU_03G014930, COCNU_06G004330 ... COCNU_06G004340, COCNU_14G002970, scaffold017116G000010
Arecaceae	Phoenix dactylifera	5	gene-LOC103698393, gene-LOC103700466, gene-LOC103706753 ... gene-LOC103710231, gene-LOC120112395
Asparagaceae	Asparagus officinalis	3	AsparagusV1_05.2682.V1.1, AsparagusV1_06.1208.V1.1 ... AsparagusV1_06.1209.V1.1
Asteraceae	Flaveria trinervia	4	Ftri14G22916, Ftri15G06208, Ftri16G03105, Ftri7G05435
Brassicaceae	Arabidopsis thaliana	1	AT5G25930.1
Brassicaceae	Eutrema salsugineum	1	Thhalv10003585m.g.v1.0
Brassicaceae	Schrenkiella parvula	1	Sp2g21740.v2.2
Brassicaceae	Brassica nigra	4	BniB02g078280.2N, BniB02g078290.2N, BniB02g078300.2N ... BniB04g004140.2N
Casuarinaceae	Casuarina equisetifolia	9	Ceq01G0058, Ceq01G0062, Ceq03G0037, Ceq03G0038, Ceq03G0039 ... Ceq03G0040, Ceq04G2063, Ceq06G0067, Ceq06G1562
Casuarinaceae	Casuarina glauca	6	Cgl01G0022, Cgl03G0046, Cgl04G2257, Cgl06G0074, Cgl06G1619 ... Cgl06G1621
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno12g02450, gene.Cymno16g03820
Dunaliellaceae	Dunaliella salina	1	Dusal.0324s00010.v1.0
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate07g16860, gene.Thate09g16420, gene.Thate09g16430
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-252
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG07.1159, evm.TU.LG07.840
Plantaginaceae	Plantago ovata	2	Pov_00003450, Pov_00013571
Plumbaginaceae	Limonium bicolor	6	Lb1G04714, Lb1G04727, Lb1G05171, Lb1G05195, Lb2G14154 ... Lb3G21111
Poaceae	Echinochloa crus-galli	22	AH02.3138, AH02.3139, AH05.1684, AH05.360, AH06.2008 ... AH06.2009, AH06.2296, AH07.1041, BH01.5239, BH02.3203, BH02.3204, BH05.1831, BH05.417, BH06.1839, BH07.3954, CH02.3314, CH02.3317, CH05.1927, CH05.477, CH06.2028, CH07.766, CH07.939
Poaceae	Eleusine coracana subsp. coracana	19	gene-QOZ80_1AG0032710, gene-QOZ80_1BG0082870 ... gene-QOZ80_2AG0106610, gene-QOZ80_2AG0107050, gene-QOZ80_2AG0108010, gene-QOZ80_2BG0160680, gene-QOZ80_2BG0161640, gene-QOZ80_4AG0303360, gene-QOZ80_4BG0334250, gene-QOZ80_4BG0334280, gene-QOZ80_5AG0366080, gene-QOZ80_5AG0383890, gene-QOZ80_5BG0413900, gene-QOZ80_5BG0430690, gene-QOZ80_5BG0449760, gene-QOZ80_6AG0542820, gene-QOZ80_6AG0542830, gene-QOZ80_6BG0496020, gene-QOZ80_6BG0496030
Poaceae	Hordeum vulgare	11	HORVU.MOREX.r3.1HG0006720.1.CDS1 ... HORVU.MOREX.r3.1HG0006740.1.CDS1, HORVU.MOREX.r3.1HG0006770.1.CDS1, HORVU.MOREX.r3.1HG0076630.1, HORVU.MOREX.r3.3HG0287850.1, HORVU.MOREX.r3.6HG0580210.1, HORVU.MOREX.r3.6HG0624460.1, HORVU.MOREX.r3.7HG0637550.1.CDS1, HORVU.MOREX.r3.7HG0648000.1, HORVU.MOREX.r3.7HG0673710.1, HORVU.MOREX.r3.7HG0718040.1
Poaceae	Lolium multiflorum	5	gene-QYE76_015921, gene-QYE76_015986, gene-QYE76_034443 ... gene-QYE76_034447, gene-QYE76_055320
Poaceae	Oryza coarctata	12	Oco02G020350, Oco03G005860, Oco03G006080, Oco04G006080 ... Oco04G006330, Oco04G006340, Oco09G014620, Oco10G014600, Oco11G011100, Oco12G011190, Oco12G011200, Oco12G011210
Poaceae	Oryza sativa	10	LOC_Os01g53920.1, LOC_Os02g12910.1, LOC_Os02g13420.1 ... LOC_Os02g13430.1, LOC_Os02g13460.1, LOC_Os02g13510.1, LOC_Os05g44770.1, LOC_Os06g36270.3, LOC_Os06g36310.1, LOC_Os06g36320.1
Poaceae	Paspalum vaginatum	12	gene-BS78_03G271900, gene-BS78_03G272000, gene-BS78_K050100 ... gene-BS78_04G094300, gene-BS78_04G105500, gene-BS78_07G030600, gene-BS78_08G053400, gene-BS78_08G053600, gene-BS78_08G123500, gene-BS78_09G207700, gene-BS78_10G165200, gene-BS78_10G165300
Poaceae	Puccinellia tenuiflora	9	Pt_Chr0102051, Pt_Chr0102884, Pt_Chr0400441, Pt_Chr0400452 ... Pt_Chr0504113, Pt_Chr0600213, Pt_Chr0602247, Pt_Chr0602287, Pt_Chr0605380
Poaceae	Sporobolus alterniflorus	10	Chr02G028940, Chr03G015800, Chr05G006600, Chr05G023380 ... Chr08G015900, Chr0G009790, Chr10G009440, Chr15G023290, Chr18G014300, Chr22G003240
Poaceae	Thinopyrum elongatum	5	Tel3E01G455700, Tel5E01G585000, Tel7E01G173400 ... Tel7E01G625700, Telscf48801G000100
Poaceae	Triticum dicoccoides	13	gene_TRIDC1AG050590, gene_TRIDC1BG057420 ... gene_TRIDC2BG000240, gene_TRIDC3AG021220, gene_TRIDC3AG041020, gene_TRIDC3BG046270, gene_TRIDC4AG060560, gene_TRIDC5BG057730, gene_TRIDC6AG027350, gene_TRIDC6AG053870, gene_TRIDC6BG033510, gene_TRIDC7AG049870, gene_TRIDC7BG043940
Poaceae	Triticum aestivum	28	TraesCS1A02G342600.1, TraesCS1B02G355700.1 ... TraesCS1D02G344700.1, TraesCS2A02G001700.1.cds1, TraesCS2B02G021400.1.cds1, TraesCS3A02G276200.2, TraesCS3B02G309900.1, TraesCS3B02G310000.1, TraesCS3D02G276100.1, TraesCS3D02G276200.2, TraesCS4A02G380300.2, TraesCS4A02G381100.1, TraesCS6A02G187400.1, TraesCS6A02G359600.2, TraesCS6B02G217100.1, TraesCS6B02G392500.1, TraesCS6D02G174300.1, TraesCS6D02G342500.1, TraesCS6D02G342600.1.cds1, TraesCS7A02G028300.1.cds1, TraesCS7A02G082600.1, TraesCS7A02G356900.1, TraesCS7B02G270900.1, TraesCS7D02G077200.1, TraesCS7D02G365800.1, TraesCSU02G101700.1.cds1, TraesCSU02G175600.1, TraesCSU02G214400.1
Poaceae	Zea mays	7	Zm00001eb083330_P001, Zm00001eb153630_P001 ... Zm00001eb204350_P002, Zm00001eb239600_P001, Zm00001eb277420_P001, Zm00001eb293660_P001, Zm00001eb384580_P002
Poaceae	Zoysia japonica	5	nbis-gene-13874, nbis-gene-22917, nbis-gene-34193 ... nbis-gene-41200, nbis-gene-41201
Poaceae	Zoysia macrostachya	7	Zma_g15394, Zma_g15433, Zma_g20487, Zma_g24841, Zma_g27250 ... Zma_g32940, Zma_g8624
Portulacaceae	Portulaca oleracea	10	evm.TU.LG07.719, evm.TU.LG07.720, evm.TU.LG07.722 ... evm.TU.LG07.724, evm.TU.LG07.725, evm.TU.LG15.212, evm.TU.LG15.213, evm.TU.LG15.215, evm.TU.LG15.216, evm.TU.LG15.217
Posidoniaceae	Posidonia oceanica	4	gene.Posoc08g12490, gene.Posoc08g12500, gene.Posoc09g06650 ... gene.Posoc09g06660
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_10_RagTag.752, evm.TU.Scaffold_4_RagTag.1896
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-13739, nbisL1-mrna-13742
Rhizophoraceae	Ceriops tagal	1	nbisL1-mrna-14173
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-4670, nbisL1-mrna-8996
Rhizophoraceae	Kandelia candel	2	evm.TU.utg000008l.1081, evm.TU.utg000033l.526
Rhizophoraceae	Kandelia obovata	2	Maker00001236, Maker00015187
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-22721, nbisL1-mrna-3859
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-1181, nbisL1-mrna-7972
Salicaceae	Populus euphratica	12	populus_peu04986, populus_peu04987, populus_peu05355 ... populus_peu05356, populus_peu05357, populus_peu05367, populus_peu05368, populus_peu05369, populus_peu05371, populus_peu05381, populus_peu05382, populus_peu12719
Solanaceae	Lycium barbarum	12	gene-LOC132599916, gene-LOC132600349, gene-LOC132600351 ... gene-LOC132635782, gene-LOC132635834, gene-LOC132635843, gene-LOC132636645, gene-LOC132636830, gene-LOC132636831, gene-LOC132636834, gene-LOC132637392, gene-LOC132637398
Solanaceae	Solanum chilense	3	SOLCI004927300, SOLCI005823900, SOLCI006937100
Solanaceae	Solanum pennellii	4	gene-LOC107007675, gene-LOC107027903, gene-LOC107028118 ... gene-LOC107028124
Tamaricaceae	Reaumuria soongarica	1	STRG.4720_chr03_-
Tamaricaceae	Tamarix chinensis	1	TC01G2578
Zosteraceae	Zostera marina	4	Zosma04g09240.v3.1, Zosma05g13120.v3.1, Zosma05g13230.v3.1 ... Zosma05g13270.v3.1