halophFGD

Basic Information

Locus ID: Ag9G02592

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr9	282560762	282564846	+	Ag9G02592

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
7.09	26,880.10 Da	53.50	76.37	-0.23

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd12420	RRM_RBPMS_like	145	226	1.33282E-33	-
Pfam	PF00076	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	147	218	6.5E-13	IPR000504
SUPERFAMILY	SSF54928	RNA-binding domain, RBD	131	218	2.01E-13	IPR035979
Gene3D	G3DSA:3.30.70.330	-	139	231	8.2E-19	IPR012677
SMART	SM00360	rrm1_1	146	223	2.0E-5	IPR000504
ProSiteProfiles	PS50102	Eukaryotic RNA Recognition Motif (RRM) profile.	145	231	11.161792	IPR000504

Gene Ontology

Molecular Function:

GO:0003676 (nucleic acid binding)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G76940.2	RNA-binding (RRM/RBD/RNP motifs) family protein.
RefSeq	XP_017219835.1	PREDICTED: RNA-binding protein 2-like [Daucus carota subsp. sativus]
Swiss-Prot	G7ID19	RNA-binding protein 2 OS=Medicago truncatula OX=3880 GN=RBP2 PE=2 SV=1
TrEMBL	A0A5B6ZM08	RRM domain-containing protein OS=Davidia involucrata OX=16924 GN=Din_013837 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	25.02747	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	20.323162	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	18.758121	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	20.445196	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	19.552189	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	18.329153	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	19.023983	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	14.408059	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	46.47401	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	44.55946	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	45.693012	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	43.898933	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	41.370602	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	40.726318	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	19.05859	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	18.824444	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	23.202061	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	19.490683	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	21.124676	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	15.890913	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	20.246004	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	33.596962	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	34.623421	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	35.012199	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	30.724297	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	23.162645	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	23.351318	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	22.575859	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	25.413471	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	30.019714		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	29.735991		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	31.997599		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	40.047249		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	43.883549		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	28.295563		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	37.738491		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	40.89011		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	43.323879		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	32.741825	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	20.714201	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	14.847774	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	13.723256	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	16.604542	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	32.476601	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	31.644798	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	18.593035	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	26.412807	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	45.794388	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	42.093887	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	46.357758	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	4	jg10275, jg13851, jg2158, jg4587
Aizoaceae	Mesembryanthemum crystallinum	3	gene_13150, gene_3336, gene_999
Amaranthaceae	Atriplex hortensis	3	Ah005333, Ah018564, Ah024364
Amaranthaceae	Beta vulgaris	3	BVRB_1g011240, BVRB_3g051310, BVRB_4g080290
Amaranthaceae	Salicornia bigelovii	6	Sbi_jg15012, Sbi_jg17551, Sbi_jg38919, Sbi_jg54199 ... Sbi_jg55833, Sbi_jg62199
Amaranthaceae	Salicornia europaea	3	Seu_jg10782, Seu_jg26333, Seu_jg800
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00007429, GOSA_00017803, GOSA_00021044
Amaranthaceae	Suaeda glauca	8	Sgl01269, Sgl06353, Sgl10170, Sgl15278, Sgl15319, Sgl15373 ... Sgl24130, Sgl29313
Amaranthaceae	Chenopodium album	9	gene:ENSEOMG00000003277, gene:ENSEOMG00000007929 ... gene:ENSEOMG00000012665, gene:ENSEOMG00000029256, gene:ENSEOMG00000029591, gene:ENSEOMG00000033393, gene:ENSEOMG00000041872, gene:ENSEOMG00000045308, gene:ENSEOMG00000049533
Amaranthaceae	Chenopodium quinoa	6	CQ.Regalona.r1.1AG0014220, CQ.Regalona.r1.1BG0011830 ... CQ.Regalona.r1.3AG0005650, CQ.Regalona.r1.3BG0005750, CQ.Regalona.r1.4AG0004360, CQ.Regalona.r1.4BG0004490
Anacardiaceae	Pistacia vera	3	pistato.v30038060, pistato.v30165310, pistato.v30261260
Apiaceae	Apium graveolens	4	Ag10G02498, Ag3G01128, Ag4G02635, Ag9G02592
Arecaceae	Cocos nucifera	4	COCNU_02G000950, COCNU_07G006760, COCNU_08G006600 ... COCNU_10G004940
Arecaceae	Phoenix dactylifera	5	gene-LOC103707719, gene-LOC103709601, gene-LOC103716719 ... gene-LOC103718657, gene-LOC113463554
Asparagaceae	Asparagus officinalis	3	AsparagusV1_04.756.V1.1, AsparagusV1_08.418.V1.1 ... AsparagusV1_08.532.V1.1
Asteraceae	Flaveria trinervia	4	Ftri16G31281, Ftri4G20935, Ftri8G16409, Ftri8G28906
Brassicaceae	Arabidopsis thaliana	2	AT1G21320.1, AT1G76940.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10008603m.g.v1.0, Thhalv10019060m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp1g18870.v2.2, Sp5g32060.v2.2
Brassicaceae	Brassica nigra	6	BniB03g009090.2N, BniB03g009110.2N, BniB03g009140.2N ... BniB03g029590.2N, BniB03g056020.2N, BniB04g035900.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq03G1956, Ceq03G1957
Casuarinaceae	Casuarina glauca	3	Cgl03G2102, Cgl03G2104, Cgl09G1785
Cymodoceaceae	Cymodocea nodosa	4	gene.Cymno01g12730, gene.Cymno06g02540, gene.Cymno09g02230 ... gene.Cymno11g08950
Dunaliellaceae	Dunaliella salina	1	Dusal.0053s00027.v1.0
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate05g01860, gene.Thate06g15790, gene.Thate08g17870
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG05.1213, evm.TU.LG06.730, evm.TU.LG07.657
Plantaginaceae	Plantago ovata	3	Pov_00013457, Pov_00022997, Pov_00041184
Plumbaginaceae	Limonium bicolor	2	Lb2G12756, Lb3G21045
Poaceae	Echinochloa crus-galli	11	AH06.246, AH06.470, AH08.2287, BH06.148, BH06.162, BH06.351 ... BH08.2428, CH06.143, CH06.342, CH08.2626, CH08.2627
Poaceae	Eleusine coracana subsp. coracana	7	gene-QOZ80_6AG0506880, gene-QOZ80_6AG0508760 ... gene-QOZ80_6AG0528800, gene-QOZ80_6BG0458560, gene-QOZ80_6BG0460920, gene-QOZ80_8AG0639740, gene-QOZ80_8BG0668350
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.7HG0642770.1, HORVU.MOREX.r3.7HG0650310.1 ... HORVU.MOREX.r3.7HG0687080.2
Poaceae	Lolium multiflorum	4	gene-QYE76_027559, gene-QYE76_027870, gene-QYE76_030513 ... gene-QYE76_030528
Poaceae	Oryza coarctata	8	Oco11G002260, Oco12G001130, Oco12G002250, Oco15G014040 ... Oco16G013230, Oco17G009960, Oco18G009960, Oco18G009980
Poaceae	Oryza sativa	5	LOC_Os06g03690.2, LOC_Os06g05530.1, LOC_Os08g43360.1 ... LOC_Os09g35830.4, LOC_Os09g35850.1
Poaceae	Paspalum vaginatum	3	gene-BS78_07G217800, gene-BS78_10G019600 ... gene-BS78_10G041500
Poaceae	Puccinellia tenuiflora	5	Pt_Chr0401910, Pt_Chr0401931, Pt_Chr0402216, Pt_Chr0403459 ... Pt_Chr0403476
Poaceae	Sporobolus alterniflorus	9	Chr0G015670, Chr11G022980, Chr11G024080, Chr14G001760 ... Chr16G018710, Chr17G017740, Chr20G002680, Chr21G000880, Chr29G000830
Poaceae	Thinopyrum elongatum	3	Tel7E01G124800, Tel7E01G199600, Tel7E01G472700
Poaceae	Triticum dicoccoides	6	gene_TRIDC4AG057500, gene_TRIDC4AG063820 ... gene_TRIDC7AG006100, gene_TRIDC7AG011410, gene_TRIDC7AG035480, gene_TRIDC7BG026620
Poaceae	Triticum aestivum	9	TraesCS4A02G396800.2, TraesCS4A02G432400.2 ... TraesCS7A02G057900.1, TraesCS7A02G096900.1, TraesCS7A02G270300.1, TraesCS7B02G168600.1, TraesCS7D02G053000.1, TraesCS7D02G093000.1, TraesCS7D02G270800.1
Poaceae	Zea mays	2	Zm00001eb202590_P001, Zm00001eb378600_P001
Poaceae	Zoysia japonica	4	nbis-gene-17594, nbis-gene-40401, nbis-gene-42802 ... nbis-gene-51176
Poaceae	Zoysia macrostachya	4	Zma_g23382, Zma_g24483, Zma_g29103, Zma_g31264
Portulacaceae	Portulaca oleracea	6	evm.TU.LG01.1590, evm.TU.LG01.498, evm.TU.LG04.1383 ... evm.TU.LG04.262, evm.TU.LG05.1904, evm.TU.LG14.838
Posidoniaceae	Posidonia oceanica	3	gene.Posoc03g23730, gene.Posoc06g11200, gene.Posoc08g01580
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_2_RagTag.1627, evm.TU.Scaffold_7_RagTag.1213 ... evm.TU.Scaffold_8_RagTag.546
Rhizophoraceae	Carallia pectinifolia	4	nbisL1-mrna-18623, nbisL1-mrna-25879, nbisL1-mrna-3585 ... nbisL1-mrna-9715
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-1088, nbisL1-mrna-11280, nbisL1-mrna-13023
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-13189, nbisL1-mrna-19014
Rhizophoraceae	Kandelia candel	4	evm.TU.utg000002l.369, evm.TU.utg000008l.713 ... evm.TU.utg000009l.329, evm.TU.utg000018l.647
Rhizophoraceae	Kandelia obovata	3	Maker00002909, Maker00005740, Maker00011790
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-2759, nbisL1-mrna-8933, nbisL1-mrna-9641
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-18417, nbisL1-mrna-18632, nbisL1-mrna-21783
Salicaceae	Populus euphratica	5	populus_peu12617, populus_peu27985, populus_peu29433 ... populus_peu32536, populus_peu37057
Solanaceae	Lycium barbarum	3	gene-LOC132627289, gene-LOC132632124, gene-LOC132639733
Solanaceae	Solanum chilense	4	SOLCI003147000, SOLCI003530900, SOLCI003531000 ... SOLCI005051100
Solanaceae	Solanum pennellii	10	gene-LOC107012415, gene-LOC107015693, gene-LOC107016977 ... gene-LOC107021897, gene-LOC107021898, gene-LOC107021899, gene-LOC107021901, gene-LOC107022889, gene-LOC107023787, gene-LOC114073857
Tamaricaceae	Reaumuria soongarica	4	STRG.8119_chr05_-, STRG.8149_chr05_+, gene_10768, gene_5058
Tamaricaceae	Tamarix chinensis	3	TC06G2670, TC08G1317, TC11G1401
Zosteraceae	Zostera marina	2	Zosma05g24870.v3.1, Zosma05g33850.v3.1