Basic Information
Locus ID:
Ag9G02551
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 279948307 | 279952888 | + | Ag9G02551 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.31 | 139,324.34 Da | 33.30 | 104.44 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 967 | 1245 | 1.21742E-91 | - |
| Pfam | PF13855 | Leucine rich repeat | 518 | 577 | 2.9E-8 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 785 | 841 | 1.1E-6 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 41 | 75 | 2.2E-7 | IPR013210 |
| Pfam | PF00560 | Leucine Rich Repeat | 301 | 322 | 0.9 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 966 | 1241 | 1.8E-45 | IPR000719 |
| SUPERFAMILY | SSF52058 | L domain-like | 375 | 654 | 4.42E-57 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 942 | 1245 | 1.19E-73 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 594 | 870 | 3.74E-56 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 46 | 390 | 2.49E-61 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 39 | 188 | 8.6E-42 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 485 | 584 | 4.9E-28 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 189 | 292 | 7.9E-30 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 293 | 389 | 1.8E-27 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1040 | 1259 | 9.1E-56 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 585 | 880 | 1.3E-85 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 390 | 484 | 7.3E-29 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 921 | 1039 | 3.4E-25 | - |
| SMART | SM00220 | serkin_6 | 961 | 1250 | 4.8E-31 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 420 | 443 | 170.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 203 | 227 | 100.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 155 | 179 | 150.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 299 | 323 | 9.9 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 828 | 859 | 11.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 683 | 707 | 9.1 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 635 | 659 | 160.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 251 | 275 | 100.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 755 | 779 | 86.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 564 | 588 | 80.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 492 | 516 | 98.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 444 | 468 | 23.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 961 | 1250 | 40.541271 | IPR000719 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 301 | 323 | 7.396226 | IPR001611 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 967 | 994 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 1089 | 1101 | - | IPR008271 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 375 | 388 | 8.0E-5 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 828 | 841 | 8.0E-5 | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G20140.1 | Leucine-rich repeat transmembrane protein kinase. Encodes GASSHO1 (GSO1), a putative leucine-rich repeat transmembrane-type receptor kinase. GSO1 and a homolog GSO2 (At5g44700) are required for the formation of a normal epidermal surface during embryogenesis. | 0 |
| RefSeq | XP_017225284.1 | PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Daucus carota subsp. sativus] | 0 |
| C0LGQ5 | LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana OX=3702 GN=GSO1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6P6U785 | LRR receptor-like serine/threonine-protein kinase GSO1 isoform X2 OS=Coffea arabica OX=13443 GN=LOC113707733 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 0.337135 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 0.68841 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 10.67967 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 5.500221 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 4.738886 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 2.047404 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 1.991966 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 1.580983 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 6.517578 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 5.568745 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 5.908089 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 13.509183 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 10.860142 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 8.011025 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.031947 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.037874 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 0.698452 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 2.196427 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0.090456 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0.014336 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 0 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 1.441656 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 0.352687 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 0.596913 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg20940 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_6128 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah036301 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g202710 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg27650, Sbi_jg32801 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg7675 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00027425 |
| Amaranthaceae | Suaeda glauca | 6 | Sgl12227, Sgl12234, Sgl12235, Sgl12308, Sgl17459, Sgl17591 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000016888, gene:ENSEOMG00000035584 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0019220, CQ.Regalona.r1.1BG0003910 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30078690, pistato.v30221030 |
| Apiaceae | Apium graveolens | 2 | Ag9G02451, Ag9G02551 |
| Arecaceae | Cocos nucifera | 1 | COCNU_06G012640 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103711425 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_03.1096.V1.1, AsparagusV1_07.3834.V1.1 ... |
| Asteraceae | Flaveria trinervia | 1 | Ftri17G21292 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT4G20140.1, AT5G44700.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10000741m.g.v1.0, Thhalv10027256m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp2g09510.v2.2, Sp7g18570.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB02g061980.2N, BniB04g012350.2N, BniB05g016420.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G0019 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G0041 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno17g02600 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g23060 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-3044 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG12.296 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00012892 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb0G37611, Lb2G08321 |
| Poaceae | Echinochloa crus-galli | 3 | AH03.3058, BH03.3231, CH03.3428 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_7AG0568160, gene-QOZ80_7BG0599550 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0145150.1 |
| Poaceae | Oryza coarctata | 2 | Oco13G007890, Oco14G008400 |
| Poaceae | Oryza sativa | 1 | LOC_Os07g31500.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G283700 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0304122 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr19G005990, Chr24G007800, Chr28G007130 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G423300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG030670, gene_TRIDC2BG034330 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G230100.1, TraesCS2B02G251700.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb105400_P001, Zm00001eb321900_P001 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g6472 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.799, evm.TU.LG23.208 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc10g08020 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_10_RagTag.1047 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-13449 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-5337 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-9270 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000004l.295 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00004138 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-18211 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-7663 |
| Salicaceae | Populus euphratica | 2 | populus_peu03839, populus_peu34677 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132603102 |
| Solanaceae | Solanum chilense | 1 | SOLCI005847100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107018927 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_6271 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G0297 |
| Zosteraceae | Zostera marina | 1 | Zosma03g25060.v3.1 |