Basic Information
Locus ID:
Ag9G02527
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin- like GTPase superfamily. Era GTPase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 279040962 | 279046170 | + | Ag9G02527 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.06 | 48,808.66 Da | 41.24 | 93.31 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04163 | Era | 143 | 320 | 3.39314E-55 | IPR030388 |
| Pfam | PF07650 | KH domain | 356 | 424 | 1.1E-7 | IPR004044 |
| Pfam | PF01926 | 50S ribosome-binding GTPase | 147 | 272 | 1.3E-15 | IPR006073 |
| SUPERFAMILY | SSF54814 | Prokaryotic type KH domain (KH-domain type II) | 333 | 429 | 2.55E-22 | IPR009019 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 145 | 328 | 3.97E-30 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 138 | 328 | 7.4E-34 | IPR027417 |
| Gene3D | G3DSA:3.30.300.20 | - | 334 | 429 | 2.4E-23 | IPR015946 |
| TIGRFAM | TIGR00436 | era: GTP-binding protein Era | 147 | 427 | 4.3E-45 | IPR005662 |
| TIGRFAM | TIGR00231 | small_GTP: small GTP-binding protein domain | 144 | 315 | 3.8E-17 | IPR005225 |
| ProSiteProfiles | PS50823 | Type-2 KH domain profile. | 353 | 429 | 11.192804 | IPR004044 |
| ProSiteProfiles | PS51713 | Era-type guanine nucleotide-binding (G) domain profile. | 144 | 322 | 43.967354 | IPR030388 |
| Hamap | MF_00367 | GTPase Era [era]. | 143 | 429 | 20.352678 | IPR005662 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 24 | 44 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 26 | 42 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G30960.1 | GTP-binding family protein. | 0 |
| RefSeq | XP_017230334.1 | PREDICTED: GTP-binding protein ERG isoform X2 [Daucus carota subsp. sativus] | 0 |
| O82653 | GTP-binding protein ERG OS=Arabidopsis thaliana OX=3702 GN=ERG PE=1 SV=2 | 0 | |
| TrEMBL | A0A166FUZ1 | GTP-binding protein ERG OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_001275 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 15.546803 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 8.922972 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 10.076384 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 10.404734 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 11.152541 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 13.469904 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 9.611157 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 10.403651 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 11.401794 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 11.58933 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 13.487676 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 14.793916 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 12.988629 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 9.469261 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 2.239085 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 4.650771 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 5.641871 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 3.996993 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 4.159041 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 4.716798 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 4.877867 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 6.462276 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 6.888873 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 6.435151 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 6.609885 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 6.289289 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 5.610894 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 5.713399 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 5.69952 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 4.234466 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 8.32817 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 8.220546 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 13.051587 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 11.468834 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 8.696259 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 7.700291 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 4.36134 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 3.828902 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 4.489958 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 3.290921 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0.892544 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 4.356131 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 2.709525 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 14.304678 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 7.372167 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 8.73572 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 4.664782 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 18.241438 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 17.255735 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 16.834625 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg20935 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_13057 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah034274 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g035340 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg20585, Sbi_jg23161 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg17016 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00009179 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl63457, Sgl67936 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000019308, gene:ENSEOMG00000021619 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2AG0012960, CQ.Regalona.r1.2BG0014850 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30079420, pistato.v30079550 |
| Apiaceae | Apium graveolens | 1 | Ag9G02527 |
| Arecaceae | Cocos nucifera | 1 | scaffold004112G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103723339 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.1471.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri16G16137 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G30960.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10007654m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g26820.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB04g046780.2N, BniB07g019730.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G0083 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G0101 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno13g03750 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g20220 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG12.332 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00012899 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G12619 |
| Poaceae | Echinochloa crus-galli | 4 | AH08.634, BH08.647, BH08.694, CH08.772 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_8AG0621420, gene-QOZ80_8BG0649870 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0692500.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_033035 |
| Poaceae | Oryza coarctata | 2 | Oco15G004190, Oco16G004000 |
| Poaceae | Oryza sativa | 1 | LOC_Os08g10649.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_07G081700 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0405432 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr16G002730, Chr17G002480, Chr29G009860 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G489900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG038900, gene_TRIDC7BG031730 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G287000.1, TraesCS7B02G199400.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb171110_P001, Zm00001eb413810_P003 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-51320 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g22628 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG07.175, evm.TU.LG15.48 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc10g08400 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_10_RagTag.1034 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-13462 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000004l.288 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00003869 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-3655 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-7677 |
| Salicaceae | Populus euphratica | 2 | populus_peu02975, populus_peu33855 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132622731 |
| Solanaceae | Solanum chilense | 1 | SOLCI005943300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107009099 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_1941 |
| Tamaricaceae | Tamarix chinensis | 3 | TC07G1526, TC07G1527, TC11G1842 |
| Zosteraceae | Zostera marina | 1 | Zosma03g22520.v3.1 |