halophFGD

Basic Information

Locus ID: Ag9G02524

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: f-box protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr9	278981670	278983387	-	Ag9G02524

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.11	32,152.40 Da	40.29	83.60	-0.38

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
TIGRFAM	TIGR01640	F_box_assoc_1: F-box protein interaction domain	5	179	2.6E-10	IPR017451

Best hit

Source	Best Hit ID	Description	E-value
RefSeq	XP_017259065.1	PREDICTED: F-box protein At3g07870-like [Daucus carota subsp. sativus]	0
TrEMBL	A0A6L5B983	F-box domain-containing protein OS=Apium graveolens OX=4045 GN=AG4045_004719 PE=4 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	0.149966	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	0.1752	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	0.089695	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	0.213897	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	0.301028	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	0	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	0.206681	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	0	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	7.063814	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	6.327252	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	7.183793	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	9.06924	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	5.865463	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	4.750128	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	0.099443	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	1.317328	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	0.559542	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	0.959479	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	0.449282	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	0.266383	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	0.687081	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	3.181047	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	2.869833	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	1.86452	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	2.324094	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	0.923227	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	0.453251	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	0.935342	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	1.184956	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	3.120919		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	4.434803		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	5.387741		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	0.566159		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	1.618986		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	0.062822		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	0.704457		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0.327305		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	0.488944		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	8.810607	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	2.275135	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	0.399487	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	0.173105	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	0.073224	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	0.531833	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	0.73766	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	0.380527	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	0.703375	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	6.990648	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	6.608411	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	6.985451	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Apiaceae	Apium graveolens	28	Ag11G04604, Ag1G01383, Ag3G00069, Ag3G01716, Ag5G02836 ... Ag6G00270, Ag6G00271, Ag6G00272, Ag7G00151, Ag7G00152, Ag7G00420, Ag7G00421, Ag7G00422, Ag7G00423, Ag7G00424, Ag7G02451, Ag9G00609, Ag9G00610, Ag9G02156, Ag9G02524, Ag9G02573, Ag9G02632, Ag9G02633, Ag9G02645, Ag9G02649, AgUnG00927, AgUnG00928, AgUnG01362