Basic Information
Locus ID:
Ag9G02501
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Scavenger mRNA decapping enzyme C-term binding
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 278022569 | 278026018 | + | Ag9G02501 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.74 | 19,769.58 Da | 38.05 | 102.40 | 0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01276 | PKCI_related | 71 | 175 | 7.01165E-53 | - |
| Pfam | PF01230 | HIT domain | 80 | 177 | 6.1E-28 | IPR001310 |
| SUPERFAMILY | SSF54197 | HIT-like | 71 | 182 | 1.31E-33 | IPR036265 |
| Gene3D | G3DSA:3.30.428.10 | - | 53 | 183 | 2.6E-40 | IPR036265 |
| ProSiteProfiles | PS51084 | HIT domain profile. | 73 | 183 | 14.757539 | IPR011146 |
| ProSitePatterns | PS00892 | HIT domain signature. | 156 | 174 | - | IPR019808 |
| PRINTS | PR00332 | Histidine triad family signature | 73 | 89 | 2.3E-20 | IPR001310 |
| PRINTS | PR00332 | Histidine triad family signature | 94 | 112 | 2.3E-20 | IPR001310 |
| PRINTS | PR00332 | Histidine triad family signature | 163 | 173 | 2.3E-20 | IPR001310 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G31160.1 | HISTIDINE TRIAD NUCLEOTIDE-BINDING 2. Encodes a member of the histidine triad nucleotide-binding family of proteins, but its activity has not been determined. | 0 |
| RefSeq | XP_017229076.1 | PREDICTED: 14 kDa zinc-binding protein-like [Daucus carota subsp. sativus] | 0 |
| P42856 | 14 kDa zinc-binding protein OS=Zea mays OX=4577 GN=ZBP14 PE=1 SV=1 | 0 | |
| TrEMBL | A0A166FVW6 | HIT domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_001310 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 27.566669 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 20.885754 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 13.585465 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 17.659426 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 15.252519 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 18.974733 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 16.458494 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 8.077722 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 32.713627 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 30.441408 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 26.250898 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 24.268694 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 28.61681 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 31.56214 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 12.425303 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 17.982786 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 16.630045 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 22.205677 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 27.380762 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 17.538219 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 24.26123 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 25.657112 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 28.148401 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 34.062462 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 31.028589 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 25.040617 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 26.824327 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 29.642584 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 30.158283 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 22.799908 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 32.155224 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 30.081093 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 39.436974 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 36.217461 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 33.574982 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 38.703533 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 21.568844 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 23.687532 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 51.794144 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 36.302361 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 39.793068 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 17.902796 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 18.805353 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 22.173162 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 21.543381 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 28.829195 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 16.861864 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 43.522068 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 49.796448 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 37.094917 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg15755, jg25080, jg33181 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_19146 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah022364, Ah024752 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_3g064520, BVRB_3g064530 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg59021, Sbi_jg59022, Sbi_jg63609, Sbi_jg63610 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg23281, Seu_jg23282 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00012869, GOSA_00012871 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl02438, Sgl02441, Sgl07591, Sgl07594 |
| Amaranthaceae | Chenopodium album | 8 | gene:ENSEOMG00000011603, gene:ENSEOMG00000013111 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.3AG0024310, CQ.Regalona.r1.3AG0024320 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30189520, pistato.v30258940 |
| Apiaceae | Apium graveolens | 3 | Ag10G02185, Ag4G01436, Ag9G02501 |
| Arecaceae | Cocos nucifera | 2 | COCNU_04G005640, COCNU_16G000260 |
| Arecaceae | Phoenix dactylifera | 4 | gene-LOC103709060, gene-LOC103713176, gene-LOC120107939 ... |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_02.1277.V1.1, AsparagusV1_08.2569.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri10G13691, Ftri17G14338 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G31160.1, AT3G56490.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10006296m.g.v1.0, Thhalv10009998m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g26980.v2.2, Sp5g06100.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB03g034800.2N, BniB06g056350.2N, BniB06g064380.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq04G1425, Ceq08G1521 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl04G1587, Cgl08G1553 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno02g17800, gene.Cymno17g03560 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.4140s00001.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate05g21230, gene.Thate07g10060 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG01.2680, evm.TU.LG12.404 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00000292, Pov_00038642 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G17704 |
| Poaceae | Echinochloa crus-galli | 5 | AH01.3807, AH06.2610, BH01.4147, BH06.2417, CH01.4423 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1BG0087460, gene-QOZ80_6AG0547630 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.4HG0380240.1, HORVU.MOREX.r3.7HG0737490.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_036253, gene-QYE76_068289 |
| Poaceae | Oryza coarctata | 6 | Oco01G022950, Oco02G023710, Oco05G012260, Oco06G014180 ... |
| Poaceae | Oryza sativa | 3 | LOC_Os01g59750.1, LOC_Os03g20630.1, LOC_Os06g45660.1 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_01G369800, gene-BS78_03G313200 ... |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0103205, Pt_Chr0106056, Pt_Chr0107853, Pt_Chr0401304 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr02G006670, Chr04G010120, Chr05G026710, Chr07G001690 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel4E01G318400, Tel7E01G803500 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC4AG017810, gene_TRIDC4BG034820 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS4A02G128600.1, TraesCS4B02G176200.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb015330_P001, Zm00001eb150020_P001 ... |
| Poaceae | Zoysia japonica | 3 | nbis-gene-31397, nbis-gene-3453, nbis-gene-9796 |
| Poaceae | Zoysia macrostachya | 4 | Zma_g11386, Zma_g1314, Zma_g30968, Zma_g3731 |
| Portulacaceae | Portulaca oleracea | 6 | evm.TU.LG07.2021, evm.TU.LG07.2022, evm.TU.LG13.1626 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc02g06440, gene.Posoc10g08960 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_8_RagTag.251 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-8518 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-17875 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000018l.832, evm.TU.utg000025l.175 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00003099 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-3175, nbisL1-mrna-8585 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-11354, nbisL1-mrna-23042 |
| Salicaceae | Populus euphratica | 2 | populus_peu26381, populus_peu29099 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132607293, gene-LOC132623815 |
| Solanaceae | Solanum chilense | 1 | SOLCI001641400 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107011241, gene-LOC107031988 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.10448_chr07_-, STRG.20960_chr08_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC08G0532 |
| Zosteraceae | Zostera marina | 2 | Zosma02g18590.v3.1, Zosma05g20140.v3.1 |