Basic Information
Locus ID:
Ag9G02455
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
DDB1- and CUL4-associated factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 275679188 | 275685018 | + | Ag9G02455 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.98 | 12,579.18 Da | 49.44 | 83.42 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 3 | 97 | 1.96E-6 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 2 | 108 | 3.2E-6 | IPR015943 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G17370.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_007138868.1 | hypothetical protein PHAVU_009G2443000g, partial [Phaseolus vulgaris] | 0 |
| TrEMBL | A0A166FUM9 | WD_REPEATS_REGION domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_001262 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 0.892062 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 1.901265 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 2.265719 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 3.279795 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 2.271451 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 3.410833 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 3.367424 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 4.84343 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 0 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 0 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 0 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 0 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 0 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 0 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 0.964833 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 0.227935 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 1.610397 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 0.183694 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 0.936928 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 0.640326 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 0.587768 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.632198 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 1.699141 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 0.711998 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0.632541 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0.784613 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 1.51311 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 0 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 0 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 0 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 0 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg20939 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_25250 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah027100 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g132700 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg13446, Sbi_jg52421 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg9429 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00013432 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl33764, Sgl39076 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000001895, gene:ENSEOMG00000002384 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0022100, CQ.Regalona.r1.6BG0023260 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30221000 |
| Apiaceae | Apium graveolens | 8 | Ag9G02454, Ag9G02455, Ag9G02535, Ag9G02536, Ag9G02542 ... |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103696415 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.3821.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G17383 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G17370.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10015915m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g26850.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB05g046480.2N, BniB07g020860.2N, BniB08g008640.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G0021 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G0043 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno18g04480 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g05400 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG12.299 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00012890 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb4G24847 |
| Poaceae | Echinochloa crus-galli | 3 | AH03.43, BH03.48, CH03.68 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_7AG0552260, gene-QOZ80_7BG0583290 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0156710.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_043178 |
| Poaceae | Oryza coarctata | 1 | Oco13G000330 |
| Poaceae | Oryza sativa | 1 | LOC_Os07g01730.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G004000 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0303351, Pt_Chr0303411 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr24G002610, Chr28G000280 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G478000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG037110, gene_TRIDC2BG040680 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G261800.1, TraesCS2B02G280400.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb298410_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-52674 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG02.2889, evm.TU.LG23.1084 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc07g03250 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_10_RagTag.1045 ... |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-13452 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-5338 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-9269 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000004l.294 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00003865 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-3650 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-7664 |
| Salicaceae | Populus euphratica | 1 | populus_peu03837 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132621424 |
| Solanaceae | Solanum chilense | 1 | SOLCI003708700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107031141 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_10715 |
| Tamaricaceae | Tamarix chinensis | 1 | TC08G0966 |
| Zosteraceae | Zostera marina | 1 | Zosma02g05430.v3.1 |