halophFGD

Basic Information

Locus ID: Ag9G02438

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Contains the following InterPro domains Copper amine oxidase, N-terminal (InterPro IPR016182), Copper amine oxidase, N2-terminal (InterPro IPR015800), Copper amine oxidase, N2 N3-terminal (InterPro IPR015801), Copper amine oxidase, N3-terminal (InterPro IPR015802), Copper amine oxidase (InterPro IPR000269), Copper amine oxidase, C-terminal (InterPro IPR015798)

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr9	273708368	273711135	+	Ag9G02438

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.81	82,174.43 Da	37.97	82.72	-0.27

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF02728	Copper amine oxidase, N3 domain	174	273	2.2E-20	IPR015802
Pfam	PF01179	Copper amine oxidase, enzyme domain	298	717	1.3E-131	IPR015798
Pfam	PF02727	Copper amine oxidase, N2 domain	83	164	8.3E-19	IPR015800
SUPERFAMILY	SSF49998	Amine oxidase catalytic domain	285	722	1.96E-147	IPR036460
SUPERFAMILY	SSF54416	Amine oxidase N-terminal region	81	166	1.28E-18	IPR016182
SUPERFAMILY	SSF54416	Amine oxidase N-terminal region	172	281	2.58E-29	IPR016182
Gene3D	G3DSA:3.10.450.40	-	82	174	1.7E-21	-
Gene3D	G3DSA:2.70.98.20	Copper amine oxidase, catalytic domain	266	726	5.4E-151	IPR036460
Gene3D	G3DSA:3.10.450.40	-	175	265	2.6E-26	-
ProSitePatterns	PS01165	Copper amine oxidase copper-binding site signature.	679	692	-	IPR000269

Gene Ontology

Biological Process:

GO:0009308 (amine metabolic process)

Molecular Function:

GO:0005507 (copper ion binding) GO:0008131 (primary methylamine oxidase activity) GO:0048038 (quinone binding)

KEGG Pathway

KO Term:

K00276 (primary-amine oxidase [EC:1.4.3.21])

Pathway:

ko00260 (Glycine, serine and threonine metabolism) map00260 (Glycine, serine and threonine metabolism) ko00350 (Tyrosine metabolism) map00350 (Tyrosine metabolism) ko00360 (Phenylalanine metabolism) map00360 (Phenylalanine metabolism) ko00410 (beta-Alanine metabolism) map00410 (beta-Alanine metabolism) ko00950 (Isoquinoline alkaloid biosynthesis) map00950 (Isoquinoline alkaloid biosynthesis) ko00960 (Tropane, piperidine and pyridine alkaloid biosynthesis) map00960 (Tropane, piperidine and pyridine alkaloid biosynthesis) ko01100 (Metabolic pathways) map01100 (Metabolic pathways) ko01110 (Biosynthesis of secondary metabolites) map01110 (Biosynthesis of secondary metabolites)

Reaction:

R02382 (Tyramine + H2O + Oxygen <=> 4-Hydroxyphenylacetaldehyde + Ammonia + Hydrogen peroxide) R02529 (Aminoacetone + H2O + Oxygen <=> Methylglyoxal + Ammonia + Hydrogen peroxide) R02613 (Phenethylamine + Oxygen + H2O <=> Phenylacetaldehyde + Ammonia + Hydrogen peroxide) R03139 (1,3-Diaminopropane + Oxygen + H2O <=> 3-Aminopropanal + Ammonia + Hydrogen peroxide) R04027 (N-Methylputrescine + Oxygen + H+ <=> 1-Methylpyrrolinium + Hydrogen peroxide + Ammonia) R04300 (Dopamine + H2O + Oxygen <=> 3,4-Dihydroxyphenylacetaldehyde + Ammonia + Hydrogen peroxide) R06154 (Methylamine + Oxygen + H2O <=> Formaldehyde + Ammonia + Hydrogen peroxide) R06740 (Cadaverine + H2O + Oxygen <=> 5-Aminopentanal + Ammonia + Hydrogen peroxide)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G62810.1	Copper amine oxidase family protein.
RefSeq	XP_017253318.1	PREDICTED: primary amine oxidase-like [Daucus carota subsp. sativus]
Swiss-Prot	Q8H1H9	Amine oxidase [copper-containing] gamma 1 OS=Arabidopsis thaliana OX=3702 GN=CuAOgamma1 PE=1 SV=1
TrEMBL	A0A166FXQ9	Amine oxidase OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_000853 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	0.401397	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	0.842946	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	0.402889	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	0	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	0	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	0	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	0	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	0	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	0.009796	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	0	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	0.0781	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	0.171143	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	0.051175	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	0.133216	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	0	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	0.163387	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	0	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	0.29767	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	0	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	0.825587	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	0.172499	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	0.153824	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	0.191997	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	0.293496	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0.514618		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0.056884		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0.079194		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	0.177314		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	0.971216		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	0		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	0.449521		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	1.230502		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	1.052151		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	0	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	0	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	0.492588	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	0	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	0.466637	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	0	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	0	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	0	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	0	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	0.017304	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	0	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	0.031451	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	7	jg12557, jg23376, jg27588, jg27899, jg27901, jg37223 ... jg37224
Aizoaceae	Mesembryanthemum crystallinum	2	gene_14835, gene_15551
Amaranthaceae	Atriplex hortensis	4	Ah004711, Ah004715, Ah011665, Ah020336
Amaranthaceae	Beta vulgaris	5	BVRB_5g098280, BVRB_5g098290, BVRB_5g098350, BVRB_5g098370 ... BVRB_5g108020
Amaranthaceae	Salicornia bigelovii	8	Sbi_jg31372, Sbi_jg4867, Sbi_jg4872, Sbi_jg57907, Sbi_jg6998 ... Sbi_jg57908, Sbi_jg7229, Sbi_jg7230
Amaranthaceae	Salicornia europaea	4	Seu_jg12778, Seu_jg12779, Seu_jg13104, Seu_jg25539
Amaranthaceae	Suaeda aralocaspica	8	GOSA_00001478, GOSA_00001479, GOSA_00001480, GOSA_00001481 ... GOSA_00001486, GOSA_00001487, GOSA_00003955, GOSA_00003956
Amaranthaceae	Suaeda glauca	16	Sgl00133, Sgl00137, Sgl00281, Sgl00287, Sgl05195, Sgl05337 ... Sgl05343, Sgl18224, Sgl51632, Sgl51633, Sgl51642, Sgl56936, Sgl56937, Sgl56938, Sgl56945, Sgl56946
Amaranthaceae	Chenopodium album	10	gene:ENSEOMG00000007109, gene:ENSEOMG00000013615 ... gene:ENSEOMG00000013798, gene:ENSEOMG00000020876, gene:ENSEOMG00000022059, gene:ENSEOMG00000024552, gene:ENSEOMG00000030867, gene:ENSEOMG00000037412, gene:ENSEOMG00000046903, gene:ENSEOMG00000050257
Amaranthaceae	Chenopodium quinoa	7	CQ.Regalona.r1.3AG0015250, CQ.Regalona.r1.3BG0014590 ... CQ.Regalona.r1.5AG0000730, CQ.Regalona.r1.5BG0000860, CQ.Regalona.r1.5BG0000920, CQ.Regalona.r1.9AG0010050, CQ.Regalona.r1.9BG0012380
Anacardiaceae	Pistacia vera	5	pistato.v30143350, pistato.v30143370, pistato.v30191620 ... pistato.v30236890, pistato.v30236910
Apiaceae	Apium graveolens	4	Ag6G01755, Ag8G01597, Ag9G02437, Ag9G02438
Arecaceae	Cocos nucifera	5	COCNU_06G014360, COCNU_07G001890, COCNU_14G012350 ... COCNU_14G012360, COCNU_14G012370
Arecaceae	Phoenix dactylifera	1	gene-LOC103706132
Asparagaceae	Asparagus officinalis	3	AsparagusV1_01.1268.V1.1, AsparagusV1_03.1540.V1.1 ... AsparagusV1_10.124.V1.1
Asteraceae	Flaveria trinervia	2	Ftri15G25881, Ftri7G33144
Brassicaceae	Arabidopsis thaliana	9	AT1G31670.1, AT1G31690.1, AT1G31710.1, AT1G62810.1 ... AT3G43670.1, AT4G12270.1, AT4G12280.1, AT4G12290.1, AT4G14940.1
Brassicaceae	Eutrema salsugineum	5	Thhalv10006982m.g.v1.0, Thhalv10007005m.g.v1.0 ... Thhalv10023306m.g.v1.0, Thhalv10024636m.g.v1.0, Thhalv10028460m.g.v1.0
Brassicaceae	Schrenkiella parvula	4	Sp1g27360.v2.2, Sp2g01790.v2.2, Sp6g05290.v2.2 ... Sp7g13090.v2.2
Brassicaceae	Brassica nigra	9	BniB01g032540.2N, BniB01g032550.2N, BniB02g058720.2N ... BniB05g021160.2N, BniB05g056570.2N, BniB05g056590.2N, BniB07g018960.2N, BniB07g019010.2N, BniB07g019020.2N
Casuarinaceae	Casuarina equisetifolia	5	Ceq03G0141, Ceq03G0145, Ceq09G1332, Ceq09G1339, Ceq09G1340
Casuarinaceae	Casuarina glauca	7	Cgl03G0159, Cgl03G0163, Cgl03G0172, Cgl09G1422, Cgl09G1428 ... Cgl09G1429, Cgl09G1430
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno06g11650, gene.Cymno18g02970
Hydrocharitaceae	Thalassia testudinum	4	gene.Thate02g03650, gene.Thate02g07180, gene.Thate02g23120 ... gene.Thate02g37610
Malvaceae	Hibiscus hamabo Siebold & Zucc.	2	nbisL1-mrna-4973, nbisL1-mrna-5425
Nitrariaceae	Nitraria sibirica	8	evm.TU.LG10.1253, evm.TU.LG11.1048, evm.TU.LG11.1050 ... evm.TU.LG11.1052, evm.TU.LG11.1053, evm.TU.LG11.1054, evm.TU.LG11.1055, evm.TU.LG11.1056
Plantaginaceae	Plantago ovata	4	Pov_00004232, Pov_00004236, Pov_00022685, Pov_00026221
Plumbaginaceae	Limonium bicolor	4	Lb2G08954, Lb2G08955, Lb2G08956, Lb2G08962
Poaceae	Echinochloa crus-galli	17	AH03.3407, AH03.3409, AH03.3410, AH03.759, AH03.807, AH08.47 ... AH09.407, BH03.3638, BH03.3639, BH03.3640, BH03.894, BH03.930, BH07.2377, CH03.1004, CH03.1059, CH03.3836, CH07.2454
Poaceae	Eleusine coracana subsp. coracana	7	gene-QOZ80_4AG0323880, gene-QOZ80_4BG0354440 ... gene-QOZ80_7AG0562390, gene-QOZ80_7AG0573670, gene-QOZ80_7BG0588850, gene-QOZ80_7BG0593540, gene-QOZ80_7BG0604960
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.2HG0106870.1, HORVU.MOREX.r3.4HG0403000.1 ... HORVU.MOREX.r3.4HG0403010.1
Poaceae	Lolium multiflorum	10	gene-QYE76_030432, gene-QYE76_037523, gene-QYE76_038470 ... gene-QYE76_038471, gene-QYE76_040144, gene-QYE76_040146, gene-QYE76_040195, gene-QYE76_040206, gene-QYE76_040558, gene-QYE76_048127
Poaceae	Oryza coarctata	5	Oco07G002130, Oco07G002170, Oco12G009660, Oco13G010580 ... Oco14G011280
Poaceae	Oryza sativa	4	LOC_Os04g20164.1, LOC_Os06g23114.1, LOC_Os06g23140.1 ... LOC_Os12g27110.1
Poaceae	Paspalum vaginatum	5	gene-BS78_02G115000, gene-BS78_02G115100, gene-BS78_K230200 ... gene-BS78_02G322300, gene-BS78_02G322400
Poaceae	Puccinellia tenuiflora	5	Pt_Chr0304502, Pt_Chr0304582, Pt_Chr0304584, Pt_Chr0304586 ... Pt_Chr0305534
Poaceae	Sporobolus alterniflorus	3	Chr24G010730, Chr26G003080, Chr28G009940
Poaceae	Thinopyrum elongatum	2	Tel2E01G167800, Tel4E01G474900
Poaceae	Triticum dicoccoides	4	gene_TRIDC2AG008460, gene_TRIDC2BG010180 ... gene_TRIDC4AG002880, gene_TRIDC4BG048750
Poaceae	Triticum aestivum	6	TraesCS2A02G076300.1, TraesCS2B02G091300.1 ... TraesCS2D02G075000.1, TraesCS4A02G020900.1, TraesCS4B02G282700.1, TraesCS4D02G281700.1
Poaceae	Zea mays	2	Zm00001eb107350_P001, Zm00001eb420190_P001
Poaceae	Zoysia japonica	3	nbis-gene-27649, nbis-gene-52772, nbis-gene-631
Poaceae	Zoysia macrostachya	3	Zma_g19383, Zma_g4996, Zma_g6695
Portulacaceae	Portulaca oleracea	11	evm.TU.LG05.2210, evm.TU.LG05.2211, evm.TU.LG10.220 ... evm.TU.LG10.223, evm.TU.LG10.224, evm.TU.LG10.225, evm.TU.LG10.227, evm.TU.LG17.212, evm.TU.LG17.215, evm.TU.LG17.216, evm.TU.LG17.218
Posidoniaceae	Posidonia oceanica	1	gene.Posoc07g06940
Rhizophoraceae	Bruguiera sexangula	5	evm.TU.Scaffold_16_RagTag.284, evm.TU.Scaffold_16_RagTag.285 ... evm.TU.Scaffold_3_RagTag.448, evm.TU.Scaffold_3_RagTag.449, evm.TU.Scaffold_3_RagTag.450
Rhizophoraceae	Carallia pectinifolia	7	nbisL1-mrna-1468, nbisL1-mrna-1469, nbisL1-mrna-1470 ... nbisL1-mrna-22520, nbisL1-mrna-22521, nbisL1-mrna-31011, nbisL1-mrna-31012
Rhizophoraceae	Ceriops tagal	5	nbisL1-mrna-5210, nbisL1-mrna-5211, nbisL1-mrna-6484 ... nbisL1-mrna-6485, nbisL1-mrna-6486
Rhizophoraceae	Ceriops zippeliana	6	nbisL1-mrna-20239, nbisL1-mrna-6178, nbisL1-mrna-6179 ... nbisL1-mrna-6180, nbisL1-mrna-6181, nbisL1-mrna-6182
Rhizophoraceae	Kandelia candel	5	add.evm.TU.utg000019l.393, evm.TU.utg000019l.949 ... evm.TU.utg000019l.950, evm.TU.utg000022l.320, evm.TU.utg000022l.321
Rhizophoraceae	Kandelia obovata	4	Maker00012751, Maker00012803, Maker00014370, Maker00014379
Rhizophoraceae	Rhizophora apiculata	5	nbisL1-mrna-18129, nbisL1-mrna-3461, nbisL1-mrna-3462 ... nbisL1-mrna-6348, nbisL1-mrna-6349
Rhizophoraceae	Rhizophora mangle	5	nbisL1-mrna-2118, nbisL1-mrna-2119, nbisL1-mrna-6592 ... nbisL1-mrna-6593, nbisL1-mrna-6594
Salicaceae	Populus euphratica	6	populus_peu03428, populus_peu03429, populus_peu07374 ... populus_peu21373, populus_peu21374, populus_peu21375
Solanaceae	Lycium barbarum	5	gene-LOC132611042, gene-LOC132611043, gene-LOC132618551 ... gene-LOC132635052, gene-LOC132636385
Solanaceae	Solanum chilense	3	SOLCI000977800, SOLCI002989600, SOLCI003526200
Solanaceae	Solanum pennellii	4	gene-LOC107012994, gene-LOC107028398, gene-LOC107030442 ... gene-LOC107030611
Tamaricaceae	Reaumuria soongarica	2	STRG.24031_chr05_-, gene_9347
Tamaricaceae	Tamarix chinensis	1	TC01G2883
Zosteraceae	Zostera marina	1	Zosma02g06220.v3.1