halophFGD

Basic Information

Locus ID: Ag9G02368

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Protein translocase subunit

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr9	269262067	269288594	+	Ag9G02368

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.22	114,917.81 Da	39.49	90.52	-0.38

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd17928	DEXDc_SecA	112	471	3.20586E-131	-
CDD	cd18803	SF2_C_secA	477	738	3.93171E-68	IPR044722
Pfam	PF01043	SecA preprotein cross-linking domain	309	415	9.0E-35	IPR011130
Pfam	PF07516	SecA Wing and Scaffold domain	765	979	3.6E-54	IPR011116
Pfam	PF07517	SecA DEAD-like domain	84	459	1.5E-121	IPR011115
SUPERFAMILY	SSF52540	P-loop containing nucleoside triphosphate hydrolases	89	472	1.6E-71	IPR027417
SUPERFAMILY	SSF52540	P-loop containing nucleoside triphosphate hydrolases	474	762	2.61E-48	IPR027417
SUPERFAMILY	SSF81767	Pre-protein crosslinking domain of SecA	303	425	1.83E-42	IPR036670
SUPERFAMILY	SSF81886	Helical scaffold and wing domains of SecA	768	998	2.88E-59	IPR036266
Gene3D	G3DSA:3.40.50.300	-	474	767	1.2E-83	IPR027417
Gene3D	G3DSA:3.40.50.300	-	91	473	6.4E-172	IPR027417
Gene3D	G3DSA:3.90.1440.10	-	305	425	6.4E-172	-
Gene3D	G3DSA:1.10.3060.10	Helical scaffold and wing domains of SecA	769	983	4.6E-55	-
SMART	SM00957	SecA_DEAD_2	77	459	2.1E-247	IPR011115
SMART	SM00958	SecA_PP_bind_2	304	415	2.4E-56	IPR011130
TIGRFAM	TIGR00963	secA: preprotein translocase, SecA subunit	98	969	0.0	IPR000185
ProSiteProfiles	PS51192	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	159	323	17.500671	IPR014001
ProSiteProfiles	PS51196	SecA family profile.	73	768	153.221832	IPR014018
ProSitePatterns	PS01312	SecA family signature.	559	574	-	IPR020937
PRINTS	PR00906	SecA protein signature	187	197	1.9E-70	IPR000185
PRINTS	PR00906	SecA protein signature	133	157	1.9E-70	IPR000185
PRINTS	PR00906	SecA protein signature	433	450	1.9E-70	IPR000185
PRINTS	PR00906	SecA protein signature	396	418	1.9E-70	IPR000185
PRINTS	PR00906	SecA protein signature	171	185	1.9E-70	IPR000185
PRINTS	PR00906	SecA protein signature	240	260	1.9E-70	IPR000185
PRINTS	PR00906	SecA protein signature	470	483	1.9E-70	IPR000185
Hamap	MF_01382	Protein translocase subunit SecA [secA].	73	983	19.011215	IPR000185
MobiDBLite	mobidb-lite	consensus disorder prediction	990	1019	-	-

Gene Ontology

Biological Process:

GO:0006605 (protein targeting) GO:0006886 (intracellular protein transport) GO:0017038 (protein import)

Molecular Function:

GO:0005524 (ATP binding)

Cellular Component:

GO:0016020 (membrane)

KEGG Pathway

KO Term:

K03070 (preprotein translocase subunit SecA [EC:7.4.2.8])

Pathway:

ko02024 (Quorum sensing) map02024 (Quorum sensing) ko03060 (Protein export) map03060 (Protein export) ko03070 (Bacterial secretion system) map03070 (Bacterial secretion system)

Best hit

Source	Best Hit ID	Description
TAIR	AT4G01800.1	Albino or Glassy Yellow 1. Encodes the ATPase subunit of the chloroplast Sec translocation machinery which plays an essential role in chloroplast biogenesis and the regulation of photosynthesis, the absence of which triggers a retrograde signal, eventually leading to a reprogramming of chloroplast and mitochondrial gene expression.
RefSeq	XP_017229250.1	PREDICTED: protein translocase subunit SECA1, chloroplastic-like [Daucus carota subsp. sativus]
Swiss-Prot	Q9SYI0	Protein translocase subunit SECA1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SECA1 PE=1 SV=2
TrEMBL	A0A166HI64	Protein translocase subunit SecA OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_002937 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	8.325307	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	6.901558	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	5.970079	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	6.510963	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	6.546349	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	9.038474	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	6.201483	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	5.178818	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	22.049459	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	19.26091	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	20.328484	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	16.383066	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	17.682243	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	15.151355	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	6.778003	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	8.392642	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	6.13207	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	23.030607	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	21.350906	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	18.16188	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	20.783504	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	6.066909	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	6.660301	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	7.1633	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	7.705748	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	21.228577	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	15.477201	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	23.208523	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	18.957632	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	4.680989		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	13.867707		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	7.495892		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	9.721854		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	3.350669		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	6.583058		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	6.289178		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	2.908375		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	3.532192		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	40.262379	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	28.15526	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	36.372246	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	3.639243	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	12.012776	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	18.738241	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	15.647272	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	3.87761	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	12.06798	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	8.750542	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	7.214966	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	6.890128	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	2	jg10458, jg9019
Aizoaceae	Mesembryanthemum crystallinum	2	gene_1077, gene_13408
Amaranthaceae	Atriplex hortensis	2	Ah024121, Ah031607
Amaranthaceae	Beta vulgaris	2	BVRB_1g010050, BVRB_5g122730
Amaranthaceae	Salicornia bigelovii	5	Sbi_jg2775, Sbi_jg28369, Sbi_jg31191, Sbi_jg58082 ... Sbi_jg58084
Amaranthaceae	Salicornia europaea	2	Seu_jg25704, Seu_jg7111
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00004576, GOSA_00020180
Amaranthaceae	Suaeda glauca	4	Sgl11665, Sgl17164, Sgl54639, Sgl59975
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000011856, gene:ENSEOMG00000013510 ... gene:ENSEOMG00000031530, gene:ENSEOMG00000034341, gene:ENSEOMG00000044225, gene:ENSEOMG00000046942
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.1AG0012840, CQ.Regalona.r1.1BG0013100 ... CQ.Regalona.r1.8AG0010550, CQ.Regalona.r1.8BG0011700
Anacardiaceae	Pistacia vera	2	pistato.v30007280, pistato.v30039110
Apiaceae	Apium graveolens	3	Ag11G03939, Ag6G02443, Ag9G02368
Arecaceae	Cocos nucifera	2	COCNU_01G000270, COCNU_15G003170
Arecaceae	Phoenix dactylifera	2	gene-LOC103701417, gene-LOC103720122
Asparagaceae	Asparagus officinalis	2	AsparagusV1_02.2259.V1.1, AsparagusV1_07.3638.V1.1
Asteraceae	Flaveria trinervia	2	Ftri10G32559, Ftri18G11286
Brassicaceae	Arabidopsis thaliana	2	AT1G21650.3, AT4G01800.2
Brassicaceae	Eutrema salsugineum	2	Thhalv10006535m.g.v1.0, Thhalv10028392m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp1g19170.v2.2, Sp6g01650.v2.2
Brassicaceae	Brassica nigra	2	BniB03g009290.2N, BniB08g040660.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq03G1867, Ceq06G0547
Casuarinaceae	Casuarina glauca	2	Cgl03G2007, Cgl06G0567
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno05g06910, gene.Cymno08g07140
Dunaliellaceae	Dunaliella salina	2	Dusal.0027s00037.v1.0, Dusal.0035s00032.v1.0
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate01g16040, gene.Thate05g12950
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG04.547, evm.TU.LG06.839
Plantaginaceae	Plantago ovata	2	Pov_00016539, Pov_00021694
Plumbaginaceae	Limonium bicolor	2	Lb4G22942, Lb6G30841
Poaceae	Echinochloa crus-galli	5	AH02.1497, BH02.1573, BH04.644, CH02.1719, CH04.655
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_1AG0015110, gene-QOZ80_1BG0063980 ... gene-QOZ80_9AG0670100, gene-QOZ80_9BG0693570
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.3HG0259100.1, HORVU.MOREX.r3.4HG0347020.1
Poaceae	Lolium multiflorum	3	gene-QYE76_052738, gene-QYE76_059523, gene-QYE76_064524
Poaceae	Oryza coarctata	3	Oco01G009280, Oco02G009570, Oco22G003520
Poaceae	Oryza sativa	2	LOC_Os01g21820.1, LOC_Os11g08980.1
Poaceae	Paspalum vaginatum	2	gene-BS78_03G139800, gene-BS78_05G097000
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0103927, Pt_Chr0603665
Poaceae	Sporobolus alterniflorus	6	Chr02G022280, Chr05G013160, Chr05G013200, Chr05G013210 ... Chr16G010730, Chr17G009810
Poaceae	Thinopyrum elongatum	2	Tel3E01G338700, Tel4E01G158600
Poaceae	Triticum dicoccoides	4	gene_TRIDC3AG028190, gene_TRIDC3BG032070 ... gene_TRIDC4AG034290, gene_TRIDC4BG015530
Poaceae	Triticum aestivum	6	TraesCS3A02G198400.1, TraesCS3B02G222700.1 ... TraesCS3D02G196700.2, TraesCS4A02G216200.1, TraesCS4B02G100000.1, TraesCS4D02G096200.1
Poaceae	Zea mays	2	Zm00001eb090990_P001, Zm00001eb130760_P002
Poaceae	Zoysia japonica	2	nbis-gene-27238, nbis-gene-6517
Poaceae	Zoysia macrostachya	2	Zma_g10242, Zma_g18533
Portulacaceae	Portulaca oleracea	3	evm.TU.LG04.1549, evm.TU.LG10.1366, evm.TU.LG11.1721
Posidoniaceae	Posidonia oceanica	2	gene.Posoc01g13940, gene.Posoc05g18660
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_5_RagTag.729, evm.TU.Scaffold_7_RagTag.1138
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-10616, nbisL1-mrna-18708
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-103, nbisL1-mrna-5559
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-11369, nbisL1-mrna-13125
Rhizophoraceae	Kandelia candel	2	evm.TU.utg000002l.412, evm.TU.utg000006l.609
Rhizophoraceae	Kandelia obovata	2	Maker00011737, Maker00013085
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-10163, nbisL1-mrna-8110
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-7364, nbisL1-mrna-9803
Salicaceae	Populus euphratica	2	populus_peu27429, populus_peu32459
Solanaceae	Lycium barbarum	2	gene-LOC132627149, gene-LOC132644885
Solanaceae	Solanum chilense	2	SOLCI001197400, SOLCI003112400
Solanaceae	Solanum pennellii	2	gene-LOC107002391, gene-LOC107004481
Tamaricaceae	Reaumuria soongarica	2	gene_17557, gene_866
Tamaricaceae	Tamarix chinensis	2	TC03G2545, TC07G1717
Zosteraceae	Zostera marina	4	Zosma03g36860.v3.1, Zosma03g36910.v3.1, Zosma06g28380.v3.1 ... Zosma07g00120.v3.1