halophFGD

Basic Information

Locus ID: Ag9G02327

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Histone-lysine n-methyltransferase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr9	267001649	267014770	-	Ag9G02327

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.06	90,929.39 Da	48.98	63.57	-0.76

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd10519	SET_EZH	663	779	3.21522E-75	-
Pfam	PF18264	CXC domain	602	633	1.2E-7	IPR041355
Pfam	PF00856	SET domain	674	777	1.3E-10	IPR001214
SUPERFAMILY	SSF82199	SET domain	564	781	8.11E-52	-
Gene3D	G3DSA:2.170.270.10	SET domain	564	780	1.1E-67	-
SMART	SM01114	CXC_2	598	635	9.1E-11	IPR033467
SMART	SM00317	set_7	663	784	7.0E-33	IPR001214
ProSiteProfiles	PS51633	CXC domain profile.	550	649	22.006956	IPR026489
ProSiteProfiles	PS51576	Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile.	7	812	267.686432	IPR025778
ProSiteProfiles	PS50280	SET domain profile.	663	778	13.515875	IPR001214
MobiDBLite	mobidb-lite	consensus disorder prediction	415	432	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	319	393	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	352	372	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	407	432	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	788	805	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	788	812	-	-
Coils	Coil	Coil	19	39	-	-

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

Cellular Component:

GO:0031519 (PcG protein complex)

KEGG Pathway

KO Term:

K11430 ([histone H3]-lysine27 N-trimethyltransferase EZH2 [EC:2.1.1.356])

Pathway:

ko00310 (Lysine degradation) map00310 (Lysine degradation)

Reaction:

R03875 (Protein lysine + S-Adenosyl-L-methionine <=> Protein N6-methyl-L-lysine + S-Adenosyl-L-homocysteine) R03938 (S-Adenosyl-L-methionine + Histone-L-lysine <=> S-Adenosyl-L-homocysteine + Histone N6-methyl-L-lysine) R04866 (S-Adenosyl-L-methionine + Protein N6-methyl-L-lysine <=> S-Adenosyl-L-homocysteine + Protein N6,N6-dimethyl-L-lysine) R04867 (S-Adenosyl-L-methionine + Protein N6,N6-dimethyl-L-lysine <=> S-Adenosyl-L-homocysteine + Protein N6,N6,N6-trimethyl-L-lysine)

Best hit

Source	Best Hit ID	Description
TAIR	AT4G02020.1	SET domain-containing protein. Encodes a polycomb group protein. Forms part of a large protein complex that can include VRN2 (VERNALIZATION 2), VIN3 (VERNALIZATION INSENSITIVE 3) and polycomb group proteins FERTILIZATION INDEPENDENT ENDOSPERM (FIE) and CURLY LEAF (CLF). The complex has a role in establishing FLC (FLOWERING LOCUS C) repression during vernalization. Performs a partially redundant role to MEA in controlling seed initiation by helping to suppress central cell nucleusendosperm proliferation within the FG.
RefSeq	XP_017230237.1	PREDICTED: histone-lysine N-methyltransferase EZA1 [Daucus carota subsp. sativus]
Swiss-Prot	Q9ZSM8	Histone-lysine N-methyltransferase EZA1 OS=Arabidopsis thaliana OX=3702 GN=EZA1 PE=1 SV=1
TrEMBL	A0A166HGT4	[Histone H3]-lysine(27) N-trimethyltransferase OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_002893 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	27.366179	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	21.088535	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	15.217174	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	18.149843	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	19.354046	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	12.269958	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	16.269796	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	10.759314	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	34.732746	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	29.878836	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	35.066635	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	33.792507	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	29.270067	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	25.080048	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	15.393121	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	15.611408	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	17.747471	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	14.692436	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	13.225936	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	13.905135	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	16.731844	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	21.482552	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	24.862911	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	22.169285	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	21.734848	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	18.173649	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	15.93208	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	16.34309	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	19.304377	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	5.342885		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	5.897378		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	4.281425		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	6.229594		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	14.332499		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	9.439269		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	4.885117		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	3.540715		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	3.422539		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	13.023792	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	8.478353	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	6.457281	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	8.020604	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	19.614033	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	29.696842	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	29.103247	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	9.093026	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	27.70562	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	26.842533	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	31.347456	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	26.060892	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	2	jg35113, jg40015
Aizoaceae	Mesembryanthemum crystallinum	2	gene_15041, gene_19265
Amaranthaceae	Atriplex hortensis	4	Ah000105, Ah004342, Ah005404, Ah005405
Amaranthaceae	Beta vulgaris	2	BVRB_5g106820, BVRB_5g121850
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg24543, Sbi_jg31326, Sbi_jg57960, Sbi_jg8391
Amaranthaceae	Salicornia europaea	2	Seu_jg11656, Seu_jg25585
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00004473, GOSA_00010875
Amaranthaceae	Suaeda glauca	4	Sgl51274, Sgl54528, Sgl56576, Sgl59869
Amaranthaceae	Chenopodium album	7	gene:ENSEOMG00000005614, gene:ENSEOMG00000007252 ... gene:ENSEOMG00000021857, gene:ENSEOMG00000021878, gene:ENSEOMG00000023549, gene:ENSEOMG00000024022, gene:ENSEOMG00000024435
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.5AG0002010, CQ.Regalona.r1.5AG0027020 ... CQ.Regalona.r1.5BG0002130, CQ.Regalona.r1.5BG0028620
Anacardiaceae	Pistacia vera	2	pistato.v30008100, pistato.v30206130
Apiaceae	Apium graveolens	4	Ag4G01104, Ag5G00291, Ag5G02886, Ag9G02327
Arecaceae	Cocos nucifera	3	COCNU_08G005060, COCNU_11G000180, COCNU_16G004410
Arecaceae	Phoenix dactylifera	3	gene-LOC103696622, gene-LOC103713764, gene-LOC103724029
Asparagaceae	Asparagus officinalis	2	AsparagusV1_07.1673.V1.1, AsparagusV1_08.1457.V1.1
Asteraceae	Flaveria trinervia	4	Ftri10G00317, Ftri15G03347, Ftri17G16197, Ftri18G17065
Brassicaceae	Arabidopsis thaliana	2	AT2G23380.1, AT4G02020.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10000037m.g.v1.0, Thhalv10028423m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp4g02390.v2.2, Sp6g01900.v2.2
Brassicaceae	Brassica nigra	2	BniB01g020410.2N, BniB08g044480.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq05G1333, Ceq06G1050
Casuarinaceae	Casuarina glauca	2	Cgl05G1338, Cgl06G1092
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno15g06510, gene.Cymno18g03860
Dunaliellaceae	Dunaliella salina	1	Dusal.0011s00040.v1.0
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate02g09320, gene.Thate05g09090
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG02.2109, evm.TU.LG04.450
Plantaginaceae	Plantago ovata	3	Pov_00024947, Pov_00029191, Pov_00029199
Plumbaginaceae	Limonium bicolor	3	Lb8G36103, Lb8G36104, Lb8G36105
Poaceae	Echinochloa crus-galli	6	AH01.3875, AH06.370, BH01.4213, BH06.488, CH01.4500 ... CH06.489
Poaceae	Eleusine coracana subsp. coracana	5	gene-QOZ80_3AG0245610, gene-QOZ80_3AG0245620 ... gene-QOZ80_3BG0282500, gene-QOZ80_6AG0510020, gene-QOZ80_6BG0462170
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.4HG0382250.1, HORVU.MOREX.r3.7HG0655900.1 ... HORVU.MOREX.r3.7HG0655960.1
Poaceae	Lolium multiflorum	3	gene-QYE76_028415, gene-QYE76_063025, gene-QYE76_068467
Poaceae	Oryza coarctata	3	Oco06G014810, Oco11G007280, Oco12G007370
Poaceae	Oryza sativa	2	LOC_Os03g19480.1, LOC_Os06g16390.1
Poaceae	Paspalum vaginatum	2	gene-BS78_01G377500, gene-BS78_10G055000
Poaceae	Puccinellia tenuiflora	4	Pt_Chr0102572, Pt_Chr0105706, Pt_Chr0402067, Pt_Chr0402103
Poaceae	Sporobolus alterniflorus	6	Chr01G032910, Chr04G009580, Chr11G022110, Chr12G006670 ... Chr14G002360, Chr21G001470
Poaceae	Thinopyrum elongatum	3	Tel4E01G329400, Tel7E01G260300, Tel7E01G260700
Poaceae	Triticum dicoccoides	5	gene_TRIDC4AG017090, gene_TRIDC4BG031660 ... gene_TRIDC7AG014970, gene_TRIDC7AG015060, gene_TRIDC7BG004320
Poaceae	Triticum aestivum	9	TraesCS4A02G121300.4, TraesCS4B02G181400.3 ... TraesCS4D02G184600.3, TraesCS7A02G128300.1, TraesCS7A02G128600.1, TraesCS7B02G028200.2, TraesCS7B02G028500.2, TraesCS7D02G127100.2, TraesCS7D02G127400.1
Poaceae	Zea mays	3	Zm00001eb014730_P001, Zm00001eb271490_P005 ... Zm00001eb396070_P002
Poaceae	Zoysia japonica	2	nbis-gene-3518, nbis-gene-5096
Poaceae	Zoysia macrostachya	2	Zma_g29163, Zma_g3769
Portulacaceae	Portulaca oleracea	4	evm.TU.LG02.1253, evm.TU.LG09.719, evm.TU.LG10.688 ... evm.TU.LG17.699
Posidoniaceae	Posidonia oceanica	2	gene.Posoc07g04650, gene.Posoc07g12580
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_6_RagTag.1859, evm.TU.Scaffold_9_RagTag.749
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-17281, nbisL1-mrna-21472
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-20015, nbisL1-mrna-8423
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-11917, nbisL1-mrna-18542
Rhizophoraceae	Kandelia candel	2	evm.TU.utg000003l.629, evm.TU.utg000011l.1134
Rhizophoraceae	Kandelia obovata	2	Maker00007791, Maker00009601
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-15493, nbisL1-mrna-1612
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-3234, nbisL1-mrna-5293
Salicaceae	Populus euphratica	4	populus_peu14405, populus_peu23376, populus_peu27351 ... populus_peu31334
Solanaceae	Lycium barbarum	3	gene-LOC132616927, gene-LOC132623421, gene-LOC132644930
Solanaceae	Solanum chilense	3	SOLCI000735100, SOLCI000869500, SOLCI001076900
Solanaceae	Solanum pennellii	3	gene-LOC107001506, gene-LOC107011481, gene-LOC107014997
Tamaricaceae	Reaumuria soongarica	2	gene_17331, gene_3847
Tamaricaceae	Tamarix chinensis	3	TC04G1756, TC07G1795, TC07G2777
Zosteraceae	Zostera marina	2	Zosma02g18570.v3.1, Zosma05g30470.v3.1