Basic Information
Locus ID:
Ag9G02309
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Beta-carotene isomerase D27
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 266051969 | 266059265 | + | Ag9G02309 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.93 | 50,419.07 Da | 38.22 | 90.33 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00317 | cyclophilin | 82 | 228 | 2.11457E-37 | - |
| Pfam | PF13225 | Domain of unknown function (DUF4033) | 337 | 418 | 2.8E-33 | IPR025114 |
| Pfam | PF00160 | Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD | 82 | 229 | 2.1E-29 | IPR002130 |
| SUPERFAMILY | SSF50891 | Cyclophilin-like | 76 | 229 | 3.36E-33 | IPR029000 |
| Gene3D | G3DSA:2.40.100.10 | - | 63 | 231 | 2.3E-36 | IPR029000 |
| ProSiteProfiles | PS50072 | Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. | 77 | 231 | 19.652466 | IPR002130 |
| PRINTS | PR00153 | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 120 | 132 | 8.4E-7 | IPR002130 |
| PRINTS | PR00153 | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 191 | 206 | 8.4E-7 | IPR002130 |
| PRINTS | PR00153 | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 94 | 109 | 8.4E-7 | IPR002130 |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G01995.3 | - | 0 |
| RefSeq | XP_017239491.1 | PREDICTED: beta-carotene isomerase D27, chloroplastic isoform X4 [Daucus carota subsp. sativus] | 0 |
| Q9C835 | Peptidyl-prolyl cis-trans isomerase CYP21-4 OS=Arabidopsis thaliana OX=3702 GN=CYP21-4 PE=2 SV=1 | 0 | |
| TrEMBL | A0A834GCD7 | PPIase cyclophilin-type domain-containing protein OS=Rhododendron simsii OX=118357 GN=RHSIM_Rhsim11G0030300 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 29.41176 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 37.001862 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 32.874706 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 33.181149 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 32.70322 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 34.52021 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 28.23407 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 22.86104 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 34.414036 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 35.959507 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 37.217724 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 30.635229 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 29.98634 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 32.691422 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 28.533176 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 27.66205 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 33.003735 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 37.628098 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 34.391563 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 32.351528 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 38.231468 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 35.917328 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 33.553745 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 31.692343 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 35.401558 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 45.524395 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 41.505337 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 44.61301 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 40.839184 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 27.600466 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 37.937225 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 28.663708 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 42.36433 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 37.389286 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 47.946217 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 30.864246 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 20.63258 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 24.014462 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 36.258873 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 40.634399 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 48.674992 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 32.312981 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 32.247341 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 37.486298 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 42.724934 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 31.909657 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 43.020458 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 37.31461 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 39.076641 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 34.439453 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg35108 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_19257 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah000096 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g121940 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg31311, Sbi_jg431, Sbi_jg57967 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg25595 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00004485 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl54542, Sgl59883 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000004652, gene:ENSEOMG00000023618 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.5BG0028710 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30008020 |
| Apiaceae | Apium graveolens | 1 | Ag9G02309 |
| Arecaceae | Cocos nucifera | 1 | COCNU_04G011100 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103700985 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.1255.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri15G19936 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G01995.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10028897m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g01880.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g040410.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G1056 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G1098 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno14g10090 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0248s00011.v1.0 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.464 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00016474 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G10132 |
| Poaceae | Echinochloa crus-galli | 3 | AH05.868, BH01.4316, CH05.1051 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0406290, gene-QOZ80_5BG0454340 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_009343 |
| Poaceae | Oryza coarctata | 1 | Oco09G001500 |
| Poaceae | Oryza sativa | 2 | LOC_Os05g04070.1, LOC_Os05g04090.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_09G030300 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0500286 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr12G023740 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G152200 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC1AG010150, gene_TRIDC1AG010240 ... |
| Poaceae | Triticum aestivum | 4 | TraesCS1A02G073000.2, TraesCS1B02G092200.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb417120_P003 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-18274 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g27643 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG02.1258, evm.TU.LG09.710 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g21990 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_9_RagTag.739 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-21481 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-14722 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-18552 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000003l.634 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00009132 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-1617 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-5301 |
| Salicaceae | Populus euphratica | 1 | populus_peu31346 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132608807 |
| Solanaceae | Solanum chilense | 1 | SOLCI004830300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107023692 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.17534_chr09_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC07G2827 |
| Zosteraceae | Zostera marina | 1 | Zosma01g38870.v3.1 |