halophFGD

Basic Information

Locus ID: Ag9G02300

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: glycerol-3-phosphate acyltransferase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr9	265764233	265766128	-	Ag9G02300

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.13	59,690.44 Da	35.34	101.83	0.20

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd06551	LPLAT	336	502	3.42062E-18	-
Pfam	PF01553	Acyltransferase	328	423	5.0E-7	IPR002123
SUPERFAMILY	SSF69593	Glycerol-3-phosphate (1)-acyltransferase	253	528	3.53E-27	-
SMART	SM00563	plsc_2	340	441	3.0E-11	IPR002123

Gene Ontology

Molecular Function:

GO:0016746 (acyltransferase activity)

KEGG Pathway

KO Term:

K13508 (glycerol-3-phosphate acyltransferase [EC:2.3.1.15 2.3.1.198])

Pathway:

ko00561 (Glycerolipid metabolism) map00561 (Glycerolipid metabolism) ko00564 (Glycerophospholipid metabolism) map00564 (Glycerophospholipid metabolism) ko01100 (Metabolic pathways) map01100 (Metabolic pathways) ko01110 (Biosynthesis of secondary metabolites) map01110 (Biosynthesis of secondary metabolites)

Module:

M00089 (Triacylglycerol biosynthesis)

Reaction:

R00851 (sn-Glycerol 3-phosphate + Acyl-CoA <=> 1-Acyl-sn-glycerol 3-phosphate + CoA) R06872 (sn-Glycerol 3-phosphate + Acyl-CoA <=> 2-Acyl-sn-glycerol 3-phosphate + CoA) R09380 (Acyl-[acyl-carrier protein] + sn-Glycerol 3-phosphate <=> 1-Acyl-sn-glycerol 3-phosphate + Acyl-carrier protein)

Best hit

Source	Best Hit ID	Description
TAIR	AT4G01950.1	glycerol-3-phosphate acyltransferase 3. Encodes a member of a family of proteins with glycerol-3-phosphate acyltransferase activity.
RefSeq	XP_017229412.1	PREDICTED: probable glycerol-3-phosphate acyltransferase 3 isoform X3 [Daucus carota subsp. sativus]
Swiss-Prot	Q9SYJ2	Probable glycerol-3-phosphate acyltransferase 3 OS=Arabidopsis thaliana OX=3702 GN=GPAT3 PE=2 SV=1
TrEMBL	A0A166HGH0	PlsC domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_002880 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	3.15438	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	2.984295	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	1.856434	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	3.553406	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	1.897171	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	3.729442	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	1.733928	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	4.002765	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	2.769605	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	2.864432	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	2.769016	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	3.604958	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	2.263754	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	2.447048	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	24.161102	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	64.523766	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	30.049089	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	16.423012	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	23.671377	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	4.780688	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	3.876496	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	2.92619	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	1.634691	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	3.423011	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	8.740223	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	12.208563	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	20.446096	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	9.64722	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	9.739037	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0.172473		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0.863856		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0.852057		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	1.545233		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	3.149571		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	1.47796		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	0.547165		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0.767896		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	0.366622		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	21.035189	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	3.599291	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	1.292741	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	0.955564	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	12.531216	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	0.124997	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	3.064543	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	0.315266	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	0.448545	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	6.793089	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	5.068628	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	10.055891	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	2	jg19250, jg21277
Aizoaceae	Mesembryanthemum crystallinum	3	gene_10242, gene_13427, gene_17054
Amaranthaceae	Atriplex hortensis	3	Ah000063, Ah005336, Ah038011
Amaranthaceae	Beta vulgaris	3	BVRB_4g080160, BVRB_5g122190, BVRB_9g205920
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg31258, Sbi_jg50977, Sbi_jg58009, Sbi_jg60784
Amaranthaceae	Salicornia europaea	2	Seu_jg22501, Seu_jg25644
Amaranthaceae	Suaeda aralocaspica	4	GOSA_00004515, GOSA_00004516, GOSA_00007425, GOSA_00015803
Amaranthaceae	Suaeda glauca	10	Sgl24125, Sgl24126, Sgl24173, Sgl24174, Sgl29307, Sgl29308 ... Sgl54582, Sgl59918, Sgl78377, Sgl80878
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000015895, gene:ENSEOMG00000021565 ... gene:ENSEOMG00000022611, gene:ENSEOMG00000036570, gene:ENSEOMG00000043519, gene:ENSEOMG00000050934
Amaranthaceae	Chenopodium quinoa	7	CQ.Regalona.r1.4AG0004540, CQ.Regalona.r1.4BG0004550 ... CQ.Regalona.r1.4BG0004560, CQ.Regalona.r1.5AG0027390, CQ.Regalona.r1.5BG0029000, CQ.Regalona.r1.9AG0003670, CQ.Regalona.r1.9BG0018740
Anacardiaceae	Pistacia vera	5	pistato.v30007850, pistato.v30013550, pistato.v30040480 ... pistato.v30080620, pistato.v30080960
Apiaceae	Apium graveolens	5	Ag10G01762, Ag10G01764, Ag10G01765, Ag11G03486, Ag9G02300
Arecaceae	Cocos nucifera	7	COCNU_01G000970, COCNU_02G004630, COCNU_04G011370 ... COCNU_12G003170, COCNU_14G004660, COCNU_16G004770, COCNU_16G004780
Arecaceae	Phoenix dactylifera	6	gene-LOC103701014, gene-LOC103701751, gene-LOC103704589 ... gene-LOC103709714, gene-LOC103719324, gene-LOC103721029
Asparagaceae	Asparagus officinalis	8	AsparagusV1_01.3044.V1.1, AsparagusV1_05.200.V1.1 ... AsparagusV1_05.201.V1.1, AsparagusV1_05.3375.V1.1, AsparagusV1_05.816.V1.1, AsparagusV1_07.1223.V1.1, AsparagusV1_07.1226.V1.1, AsparagusV1_07.1227.V1.1
Asteraceae	Flaveria trinervia	4	Ftri10G09852, Ftri17G12757, Ftri18G31644, Ftri9G13618
Brassicaceae	Arabidopsis thaliana	3	AT1G02390.1, AT1G06520.1, AT4G01950.1
Brassicaceae	Eutrema salsugineum	3	Thhalv10007168m.g.v1.0, Thhalv10007347m.g.v1.0 ... Thhalv10028577m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp1g01470.v2.2, Sp1g05280.v2.2, Sp6g01830.v2.2
Brassicaceae	Brassica nigra	4	BniB03g037910.2N, BniB06g044110.2N, BniB08g040460.2N ... BniB08g044390.2N
Casuarinaceae	Casuarina equisetifolia	3	Ceq02G2212, Ceq06G1100, Ceq09G1982
Casuarinaceae	Casuarina glauca	3	Cgl02G2303, Cgl06G1141, Cgl09G2164
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno11g00300
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate01g31630, gene.Thate04g16620, gene.Thate05g14550
Malvaceae	Hibiscus hamabo Siebold & Zucc.	2	nbisL1-mrna-10250, nbisL1-mrna-6787
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG04.1428, evm.TU.LG04.481, evm.TU.LG06.997
Plantaginaceae	Plantago ovata	3	Pov_00003509, Pov_00004251, Pov_00037888
Plumbaginaceae	Limonium bicolor	2	Lb4G21599, Lb4G21620
Poaceae	Echinochloa crus-galli	20	AH01.470, AH02.1007, AH02.2430, AH04.2217, AH05.3191 ... AH05.3744, AH08.1090, BH01.269, BH02.1119, BH02.1449, BH02.2546, BH04.2290, BH05.3187, BH05.3796, CH01.104, CH02.1182, CH02.2721, CH04.2621, CH05.3997, CH07.2690
Poaceae	Eleusine coracana subsp. coracana	14	gene-QOZ80_1AG0005510, gene-QOZ80_1AG0013950 ... gene-QOZ80_1AG0025640, gene-QOZ80_1BG0054130, gene-QOZ80_1BG0062770, gene-QOZ80_1BG0076120, gene-QOZ80_3AG0209660, gene-QOZ80_3BG0254770, gene-QOZ80_5AG0394060, gene-QOZ80_5AG0400160, gene-QOZ80_5BG0442380, gene-QOZ80_5BG0448830, gene-QOZ80_9AG0692490, gene-QOZ80_9BG0718560
Poaceae	Hordeum vulgare	8	HORVU.MOREX.r3.2HG0117740.1, HORVU.MOREX.r3.3HG0247090.1 ... HORVU.MOREX.r3.3HG0273880.1, HORVU.MOREX.r3.3HG0296680.1, HORVU.MOREX.r3.4HG0417370.1, HORVU.MOREX.r3.5HG0443100.1.CDS1, HORVU.MOREX.r3.5HG0529400.1, HORVU.MOREX.r3.6HG0538810.1
Poaceae	Lolium multiflorum	10	gene-QYE76_001855, gene-QYE76_010708, gene-QYE76_050277 ... gene-QYE76_053433, gene-QYE76_054016, gene-QYE76_054021, gene-QYE76_054031, gene-QYE76_060457, gene-QYE76_065529, gene-QYE76_065562
Poaceae	Oryza coarctata	15	Oco01G006750, Oco01G008760, Oco01G015250, Oco02G007030 ... Oco02G008980, Oco02G009760, Oco02G015510, Oco05G028250, Oco06G029140, Oco09G005960, Oco15G004000, Oco21G009810, Oco22G011080, Oco23G008500, Oco24G008100
Poaceae	Oryza sativa	9	LOC_Os01g14900.1, LOC_Os01g19390.1, LOC_Os01g22560.1 ... LOC_Os01g22570.1, LOC_Os01g44069.1, LOC_Os03g61720.1, LOC_Os05g20100.1, LOC_Os11g45400.1, LOC_Os12g37600.1
Poaceae	Paspalum vaginatum	10	gene-BS78_01G022700, gene-BS78_03G102300, gene-BS78_K072800 ... gene-BS78_03G130600, gene-BS78_03G204000, gene-BS78_05G242000, gene-BS78_05G247800, gene-BS78_06G296800, gene-BS78_08G106000, gene-BS78_K147700
Poaceae	Puccinellia tenuiflora	6	Pt_Chr0103470, Pt_Chr0106004, Pt_Chr0200110, Pt_Chr0206928 ... Pt_Chr0501392, Pt_Chr0603101
Poaceae	Sporobolus alterniflorus	14	Chr01G022730, Chr02G014840, Chr03G002190, Chr03G011670 ... Chr04G017110, Chr05G018890, Chr06G017740, Chr07G013910, Chr08G002880, Chr08G011850, Chr16G004050, Chr17G003730, Chr22G011880, Chr27G007260
Poaceae	Thinopyrum elongatum	12	Tel2E01G275300, Tel3E01G263200, Tel3E01G389100 ... Tel3E01G389400, Tel3E01G543000, Tel4E01G226600, Tel4E01G638000, Tel5E01G171200, Tel5E01G791500, Tel6E01G140800, Tel6E01G141300, Tel7E01G875300
Poaceae	Triticum dicoccoides	16	gene_TRIDC2AG016630, gene_TRIDC2BG020240 ... gene_TRIDC3AG019400, gene_TRIDC3AG034090, gene_TRIDC3AG048970, gene_TRIDC3BG024680, gene_TRIDC3BG038580, gene_TRIDC3BG055170, gene_TRIDC4AG027610, gene_TRIDC4AG053790, gene_TRIDC4BG022850, gene_TRIDC4BG064310, gene_TRIDC5AG013250, gene_TRIDC5BG015320, gene_TRIDC6BG000510, gene_TRIDC7BG066560
Poaceae	Triticum aestivum	26	TraesCS2A02G134500.1, TraesCS2B02G158000.1 ... TraesCS2D02G136700.1, TraesCS3A02G146100.1, TraesCS3A02G227400.1, TraesCS3A02G339700.1, TraesCS3B02G173200.1, TraesCS3B02G257000.2, TraesCS3B02G371300.1, TraesCS3D02G155000.1, TraesCS3D02G225300.1, TraesCS3D02G333200.1, TraesCS4A02G171600.1, TraesCS4A02G361400.1, TraesCS4D02G143600.1, TraesCS5A02G086200.1.cds1, TraesCS5B02G092200.1, TraesCS5B02G511500.1, TraesCS5D02G099700.1.cds1, TraesCS5D02G512000.1, TraesCS7B02G419500.1, TraesCS7D02G498800.1, TraesCSU02G033700.1, TraesCSU02G069100.1, TraesCSU02G241800.1.cds1, TraesCSU02G250600.1.cds1
Poaceae	Zea mays	6	Zm00001eb063420_P001, Zm00001eb115970_P001 ... Zm00001eb127520_P001, Zm00001eb136910_P001, Zm00001eb159140_P001, Zm00001eb358940_P001
Poaceae	Zoysia japonica	9	nbis-gene-13464, nbis-gene-16657, nbis-gene-30287 ... nbis-gene-30288, nbis-gene-30336, nbis-gene-32411, nbis-gene-45981, nbis-gene-50576, nbis-gene-53871
Poaceae	Zoysia macrostachya	7	Zma_g10708, Zma_g19147, Zma_g2441, Zma_g2442, Zma_g25978 ... Zma_g26579, Zma_g7850
Portulacaceae	Portulaca oleracea	8	evm.TU.LG02.1290, evm.TU.LG08.1294, evm.TU.LG08.731 ... evm.TU.LG09.679, evm.TU.LG18.1547, evm.TU.LG20.335, evm.TU.LG22.1384, evm.TU.LG22.194
Posidoniaceae	Posidonia oceanica	2	gene.Posoc01g13950, gene.Posoc04g00830
Rhizophoraceae	Bruguiera sexangula	5	evm.TU.Scaffold_2_RagTag.2112, evm.TU.Scaffold_5_RagTag.1773 ... evm.TU.Scaffold_5_RagTag.772, evm.TU.Scaffold_5_RagTag.773, evm.TU.Scaffold_9_RagTag.729
Rhizophoraceae	Carallia pectinifolia	5	nbisL1-mrna-10561, nbisL1-mrna-12268, nbisL1-mrna-21491 ... nbisL1-mrna-2870, nbisL1-mrna-2926
Rhizophoraceae	Ceriops tagal	4	nbisL1-mrna-12187, nbisL1-mrna-1325, nbisL1-mrna-20030 ... nbisL1-mrna-7786
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-10759, nbisL1-mrna-11414, nbisL1-mrna-18561
Rhizophoraceae	Kandelia candel	4	add.evm.TU.utg000006l.228, evm.TU.utg000003l.641 ... evm.TU.utg000006l.1036, evm.TU.utg000006l.580
Rhizophoraceae	Kandelia obovata	3	Maker00009641, Maker00013803, Maker00014149
Rhizophoraceae	Rhizophora apiculata	4	nbisL1-mrna-10131, nbisL1-mrna-10568, nbisL1-mrna-1626 ... nbisL1-mrna-21991
Rhizophoraceae	Rhizophora mangle	4	nbisL1-mrna-15708, nbisL1-mrna-16107, nbisL1-mrna-5312 ... nbisL1-mrna-7407
Salicaceae	Populus euphratica	2	populus_peu14965, populus_peu31361
Solanaceae	Lycium barbarum	1	gene-LOC132616778
Solanaceae	Solanum chilense	1	SOLCI006321900
Solanaceae	Solanum pennellii	1	gene-LOC107024606
Tamaricaceae	Reaumuria soongarica	2	gene_16623, gene_17296
Tamaricaceae	Tamarix chinensis	2	TC06G0034, TC07G1762
Zosteraceae	Zostera marina	1	Zosma02g21020.v3.1