halophFGD

Basic Information

Locus ID: Ag9G02267

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: 60s ribosomal protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr9	264216998	264219986	+	Ag9G02267

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
11.14	21,089.67 Da	40.25	83.42	-0.45

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF17135	Ribosomal protein 60S L18 and 50S L18e	2	187	7.4E-93	IPR021131
SUPERFAMILY	SSF52080	Ribosomal proteins L15p and L18e	21	139	3.79E-26	IPR036227
Gene3D	G3DSA:3.100.10.10	-	1	187	8.1E-99	-
MobiDBLite	mobidb-lite	consensus disorder prediction	153	187	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	164	187	-	-

KEGG Pathway

KO Term:

K02883 (large subunit ribosomal protein L18e)

Pathway:

ko03010 (Ribosome) map03010 (Ribosome)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G05590.1	ribosomal protein L18. Encodes cytoplasmic ribosomal protein L18.
RefSeq	XP_017230998.1	PREDICTED: 60S ribosomal protein L18-2 [Daucus carota subsp. sativus]
Swiss-Prot	P42791	Large ribosomal subunit protein eL18y OS=Arabidopsis thaliana OX=3702 GN=RPL18B PE=1 SV=2
TrEMBL	A0A166CDL5	Ribosomal_L18e/L15P domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_002849 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	235.275757	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	160.314041	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	133.113358	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	126.090248	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	145.543121	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	148.555054	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	117.859215	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	89.015739	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	475.824493	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	477.335022	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	485.118378	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	554.133545	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	549.404419	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	526.901672	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	302.34726	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	421.060089	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	457.015961	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	353.016632	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	325.778687	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	392.146759	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	356.319611	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	564.991638	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	653.864136	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	629.51001	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	562.374451	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	342.604218	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	396.826355	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	366.017212	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	440.583038	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	263.848297		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	362.227539		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	403.239197		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	319.786987		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	474.763672		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	284.056335		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	273.940369		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	206.037216		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	227.858154		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	460.899384	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	223.187729	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	130.826416	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	579.438538	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	331.927399	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	455.449005	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	329.772095	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	815.894653	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	327.069946	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	665.29187	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	568.387329	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	557.760742	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	3	jg35164, jg37930, jg8909
Aizoaceae	Mesembryanthemum crystallinum	2	gene_10392, gene_6370
Amaranthaceae	Atriplex hortensis	3	Ah005715, Ah029415, Ah029416
Amaranthaceae	Beta vulgaris	2	BVRB_4g076000, BVRB_7g163580
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg1285, Sbi_jg17178, Sbi_jg35284, Sbi_jg61787
Amaranthaceae	Salicornia europaea	2	Seu_jg3430, Seu_jg439
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00015370, GOSA_00024397, GOSA_00026796
Amaranthaceae	Suaeda glauca	2	Sgl74090, Sgl77570
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000007770, gene:ENSEOMG00000008760 ... gene:ENSEOMG00000031062, gene:ENSEOMG00000035938, gene:ENSEOMG00000040553, gene:ENSEOMG00000042559
Amaranthaceae	Chenopodium quinoa	5	CQ.Regalona.r1.4AG0007860, CQ.Regalona.r1.4BG0008000 ... CQ.Regalona.r1.7AG0012850, CQ.Regalona.r1.7AG0021760, CQ.Regalona.r1.7BG0014820
Anacardiaceae	Pistacia vera	2	pistato.v30008880, pistato.v30081600
Apiaceae	Apium graveolens	3	Ag10G01811, Ag2G02519, Ag9G02267
Arecaceae	Cocos nucifera	4	COCNU_01G001630, COCNU_12G002580, COCNU_16G003640 ... scaffold010452G000020
Arecaceae	Phoenix dactylifera	6	gene-LOC103696227, gene-LOC103703629, gene-LOC103721685 ... gene-LOC120105778, gene-LOC120106974, gene-LOC120107273
Asparagaceae	Asparagus officinalis	4	AsparagusV1_02.2148.V1.1, AsparagusV1_04.1389.V1.1 ... AsparagusV1_08.1454.V1.1, AsparagusV1_10.854.V1.1
Asteraceae	Flaveria trinervia	4	Ftri11G04124, Ftri12G10345, Ftri15G00353, Ftri3G14162
Brassicaceae	Arabidopsis thaliana	3	AT2G47570.1, AT3G05590.1, AT5G27850.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10004865m.g.v1.0, Thhalv10021598m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp2g20970.v2.2, Sp3g04470.v2.2
Brassicaceae	Brassica nigra	6	BniB01g058010.2N, BniB02g078970.2N, BniB04g004730.2N ... BniB07g032840.2N, BniB07g038700.2N, BniB07g062550.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq06G0982, Ceq06G1153
Casuarinaceae	Casuarina glauca	2	Cgl06G1012, Cgl06G1203
Cymodoceaceae	Cymodocea nodosa	4	gene.Cymno15g06210, gene.Cymno15g06300, gene.Cymno17g01210 ... gene.Cymno18g01160
Dunaliellaceae	Dunaliella salina	1	Dusal.0152s00012.v1.0
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate01g03120, gene.Thate06g16680, gene.Thate07g09400
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG03.2491, evm.TU.LG04.373
Plantaginaceae	Plantago ovata	3	Pov_00023797, Pov_00024906, Pov_00036808
Plumbaginaceae	Limonium bicolor	4	Lb1G06502, Lb1G07594, Lb2G12654, Lb4G24504
Poaceae	Echinochloa crus-galli	9	AH01.3698, AH03.4043, AH05.1020, BH01.4049, BH03.4380 ... BH05.1070, CH01.4314, CH05.1220, CH07.136
Poaceae	Eleusine coracana subsp. coracana	5	gene-QOZ80_3AG0247680, gene-QOZ80_3BG0280550 ... gene-QOZ80_5AG0404260, gene-QOZ80_7AG0581600, gene-QOZ80_7BG0612680
Poaceae	Lolium multiflorum	3	gene-QYE76_009996, gene-QYE76_010063, gene-QYE76_038797
Poaceae	Oryza coarctata	6	Oco05G013160, Oco06G013270, Oco09G002620, Oco10G002710 ... Oco13G015680, Oco14G016500
Poaceae	Oryza sativa	3	LOC_Os03g22180.1, LOC_Os05g06310.1, LOC_Os07g47780.1
Poaceae	Paspalum vaginatum	3	gene-BS78_01G359600, gene-BS78_02G388300 ... gene-BS78_09G056800
Poaceae	Puccinellia tenuiflora	4	Pt_Chr0102699, Pt_Chr0305525, Pt_Chr0305565, Pt_Chr0501925
Poaceae	Sporobolus alterniflorus	8	Chr01G012120, Chr04G011010, Chr12G024530, Chr18G000740 ... Chr19G000460, Chr22G014950, Chr24G012430, Chr27G017120
Poaceae	Thinopyrum elongatum	3	Tel1E01G203200, Tel2E01G236400, Tel4E01G254300
Poaceae	Triticum dicoccoides	7	gene_TRIDC1AG016800, gene_TRIDC1BG018140 ... gene_TRIDC2AG013110, gene_TRIDC2BG016120, gene_TRIDC4AG020120, gene_TRIDC4BG030350, gene_TRIDC7BG037350
Poaceae	Triticum aestivum	8	TraesCS1A02G096500.2, TraesCS1B02G127200.1 ... TraesCS1D02G105500.2, TraesCS2A02G109900.1, TraesCS2B02G127900.1, TraesCS2D02G110100.1, TraesCS4B02G166800.1, TraesCS4D02G169400.1
Poaceae	Zea mays	3	Zm00001eb282790_P004, Zm00001eb330480_P001 ... Zm00001eb346100_P001
Poaceae	Zoysia japonica	6	nbis-gene-110, nbis-gene-18156, nbis-gene-23448 ... nbis-gene-3321, nbis-gene-33230, nbis-gene-41661
Poaceae	Zoysia macrostachya	4	Zma_g26460, Zma_g27723, Zma_g5772, Zma_g7065
Portulacaceae	Portulaca oleracea	6	evm.TU.LG01.105, evm.TU.LG03.857, evm.TU.LG04.644 ... evm.TU.LG08.700, evm.TU.LG12.880, evm.TU.LG22.1310
Posidoniaceae	Posidonia oceanica	3	gene.Posoc02g07950, gene.Posoc04g17960, gene.Posoc07g11760
Rhizophoraceae	Bruguiera sexangula	4	evm.TU.Scaffold_1_RagTag.99, evm.TU.Scaffold_2_RagTag.2073 ... evm.TU.Scaffold_5_RagTag.842, evm.TU.Scaffold_9_RagTag.805
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-11497, nbisL1-mrna-21423, nbisL1-mrna-2887
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-12847, nbisL1-mrna-14198, nbisL1-mrna-19971
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-11475, nbisL1-mrna-13670, nbisL1-mrna-18494
Rhizophoraceae	Kandelia candel	3	evm.TU.utg000003l.596, evm.TU.utg000006l.206 ... evm.TU.utg000009l.46
Rhizophoraceae	Kandelia obovata	3	Maker00005041, Maker00009832, Maker00013573
Rhizophoraceae	Rhizophora apiculata	4	nbisL1-mrna-10092, nbisL1-mrna-12993, nbisL1-mrna-1575 ... nbisL1-mrna-7888
Rhizophoraceae	Rhizophora mangle	4	nbisL1-mrna-16140, nbisL1-mrna-5243, nbisL1-mrna-7469 ... nbisL1-mrna-90
Salicaceae	Populus euphratica	5	populus_peu13340, populus_peu15667, populus_peu27282 ... populus_peu31257, populus_peu31268
Solanaceae	Lycium barbarum	3	gene-LOC132603186, gene-LOC132610570, gene-LOC132645985
Solanaceae	Solanum chilense	2	SOLCI001828600, SOLCI006761100
Solanaceae	Solanum pennellii	2	gene-LOC107006365, gene-LOC107031740
Tamaricaceae	Reaumuria soongarica	3	STRG.32707_chr09_-, gene_4879, gene_7063
Tamaricaceae	Tamarix chinensis	2	TC01G0393, TC02G0844
Zosteraceae	Zostera marina	1	Zosma06g02920.v3.1